1 Response_reg#1
11-123 aa · 113 aa · 55.4% of protein
Raw token
Response_reg:11:2.27e-36:123:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBO_RS02370
Response regulator, unclassified
Shigella boydii Sb227 · GCF_000012025
ClassRRTypeunclassifiedLength204 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000012025#SBO_RS02370Stable P2CS identifier used across views.
GenomeGCF_000012025Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length204 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 204 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa204 aa
Domain-by-domain annotation2 items
2 GerE#2
154-202 aa · 49 aa · 24.0% of protein
Raw token
GerE:154:2.46e-19:202:49:57- Raw architecture: Response_reg:11:2.27e-36:123:113:111#GerE:154:2.46e-19:202:49:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000012025::NC_007613.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span443861-444475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSBO_0429RefSeq proteinWP_000114020.1
Context group ID
GCF_000012025::NC_007613.1::G00002Context members
SBO_RS02370
Partner locus tags
SBO_RS02370
Partner old locus tags
SBO_0429
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000114020.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3R6N2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3R6N2_SHIFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBO_RS02370Primary locus identifier stored in the genes table.
Old locus tagSBO_0429Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007613.1Sequence record reported by the local genomic context database.
Genomic interval443 861-444 475 nt615 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span443 861-444 475 ntGCF_000012025::NC_007613.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000012025::NC_007613.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007613.1All displayed genes belong to this local TCS context.
Neighborhood span443 861-444 475 nt615 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
443 861 nt444 475 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBO_RS02370GCF_000012025#SBO_RS02370
RRunclassifiedCurrent focus
443 861-444 475 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000012025#SBO_RS02370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2098186
Simplified PFAM architecture for RROC_2098186
PFAM domain coverage: 161 / 204 aa (78.9%)
1 aa204 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[154-201]
- Domain count: 2
- Matched identifier: RROC_2098186
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 154-201 ; GerE 154-201
Cluster members and taxonomy
Representative gene: GCF_000012025#SBO_RS02370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 300 268 · GCF_000012025
AssemblyASM1202v1 · Complete Genomehaploid
Genome composition4 646 520 bp · 51,0% GCShigella boydii Sb227
Signal transduction countsGenes 55 · HK 26 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key