1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:1.15e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBO_RS05730
Response regulator OmpR family
Shigella boydii Sb227 · GCF_000012025
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000012025#SBO_RS05730Stable P2CS identifier used across views.
GenomeGCF_000012025Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:146:4.44e-30:218:74:77- Raw architecture: Response_reg:3:1.15e-32:112:111:111#Trans_reg_C:146:4.44e-30:218:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000012025::NC_007613.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1054338-1056367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSBO_1037RefSeq proteinWP_001339045.1
Context group ID
GCF_000012025::NC_007613.1::G00007Context members
SBO_RS05730SBO_RS05735
Partner locus tags
SBO_RS05730SBO_RS05735
Partner old locus tags
SBO_1037SBO_1038
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001339045.1Primary protein accession used for annex mappings.
UniProt accessionI6ELZ7Primary UniProt accession resolved in the annex database.
UniProt IDI6ELZ7_SHIBODisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBO_RS05730Primary locus identifier stored in the genes table.
Old locus tagSBO_1037Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007613.1Sequence record reported by the local genomic context database.
Genomic interval1 054 338-1 055 009 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 054 338-1 056 367 ntGCF_000012025::NC_007613.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000012025::NC_007613.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007613.1All displayed genes belong to this local TCS context.
Neighborhood span1 054 338-1 056 367 nt2 030 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 054 338 nt1 056 367 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SBO_RS05730GCF_000012025#SBO_RS05730
RROmpRCurrent focus
1 054 338-1 055 009 nt · Forward (+)
SBO_RS05735GCF_000012025#SBO_RS05735
HKClassic
1 055 009-1 056 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008865#ECs_2707Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0653015
Simplified PFAM architecture for RROC_0653015
PFAM domain coverage: 183 / 260 aa (70.4%)
1 aa260 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[40-149] | Trans_reg_C[183-255]
- Domain count: 2
- Matched identifier: RROC_0653015
- Positioned domains: Response_reg 40-149 ; Response_reg 40-149 ; Trans_reg_C 183-255 ; Trans_reg_C 183-255
Cluster members and taxonomy
Representative gene: GCF_000008865#ECs_2707
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 300 268 · GCF_000012025
AssemblyASM1202v1 · Complete Genomehaploid
Genome composition4 646 520 bp · 51,0% GCShigella boydii Sb227
Signal transduction countsGenes 55 · HK 26 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key