1 Response_reg#1
4-113 aa · 110 aa · 44.5% of protein
Raw token
Response_reg:4:1.66e-21:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SF1629
Response regulator OmpR family
Shigella flexneri 2a str. 301 · GCF_000006925
ClassRRTypeOmpRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006925#SF1629Stable P2CS identifier used across views.
GenomeGCF_000006925Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 247 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 31.2% of protein
Raw token
Trans_reg_C:157:2.65e-27:233:77:77- Raw architecture: Response_reg:4:1.66e-21:113:111:111#Trans_reg_C:157:2.65e-27:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006925::NC_004337.2::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1656796-1657539Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000006925::NC_004337.2::G00009Context members
SF1629
Partner locus tags
SF1629
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for NP_707505.2.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSF1629Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_004337.2Sequence record reported by the local genomic context database.
Genomic interval1 656 796-1 657 539 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 656 796-1 657 539 ntGCF_000006925::NC_004337.2::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006925::NC_004337.2::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004337.2All displayed genes belong to this local TCS context.
Neighborhood span1 656 796-1 657 539 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 656 796 nt1 657 539 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SF1629GCF_000006925#SF1629
RROmpRCurrent focus
1 656 796-1 657 539 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0756281
Simplified PFAM architecture for RROC_0756281
PFAM domain coverage: 185 / 247 aa (74.9%)
1 aa247 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[158-233]
- Domain count: 2
- Matched identifier: RROC_0756281
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 158-233 ; Trans_reg_C 158-233
Cluster members and taxonomy
Representative gene: GCF_000006925#SF1629
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 198 214 · GCF_000006925
AssemblyASM692v2 · Complete Genomereference genome · haploid
Genome composition4 828 820 bp · 50,5% GCShigella flexneri 2a str. 301
Signal transduction countsGenes 54 · HK 25 · RR 29CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key