1 HAMP#1
161-232 aa · 72 aa · 16.2% of protein
Raw token
HAMP:161:0.000000219:232:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XF_RS11035
Histidine kinase, Classic
Xylella fastidiosa 9a5c · GCF_000006725
ClassHKTypeClassicLength445 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006725#XF_RS11035Stable P2CS identifier used across views.
GenomeGCF_000006725Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xylella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length445 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 445 aa (53.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa445 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-302 aa · 65 aa · 14.6% of protein
Raw token
HisKA:238:2.02e-17:302:65:643 HATPase_c#3
344-443 aa · 100 aa · 22.5% of protein
Raw token
HATPase_c:344:1.11e-20:443:104:109- Raw architecture: HAMP:161:0.000000219:232:73:69#HisKA:238:2.02e-17:302:65:64#HATPase_c:344:1.11e-20:443:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006725::NC_002488.3::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2407544-2409551Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXF2535%2CXF_2535RefSeq proteinWP_023907057.1
Context group ID
GCF_000006725::NC_002488.3::G00015Context members
XF_RS11030XF_RS11035
Partner locus tags
XF_RS11030XF_RS11035
Partner old locus tags
XF2534%2CXF_2534XF2535%2CXF_2535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_023907057.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXF_RS11035Primary locus identifier stored in the genes table.
Old locus tagXF2535%2CXF_2535Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_002488.3Sequence record reported by the local genomic context database.
Genomic interval2 408 214-2 409 551 nt1 338 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 407 544-2 409 551 ntGCF_000006725::NC_002488.3::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006725::NC_002488.3::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002488.3All displayed genes belong to this local TCS context.
Neighborhood span2 407 544-2 409 551 nt2 008 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 407 544 nt2 409 551 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XF_RS11030GCF_000006725#XF_RS11030
RROmpR
2 407 544-2 408 221 nt · Forward (+)
XF_RS11035GCF_000006725#XF_RS11035
HKClassicCurrent focus
2 408 214-2 409 551 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006725#XF_RS11035The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2021937
Simplified PFAM architecture for HKOC_2021937
PFAM domain coverage: 162 / 445 aa (36.4%)
1 aa445 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[238-302] | HATPase_c[345-441]
- Domain count: 2
- Matched identifier: HKOC_2021937
- Positioned domains: HisKA 238-302 ; HATPase_c 345-441
Cluster members and taxonomy
Representative gene: GCF_000006725#XF_RS11035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 160 492 · GCF_000006725
AssemblyASM672v1 · Complete Genomehaploid
Genome composition2 731 750 bp · 52,5% GCXylella fastidiosa 9a5c
Signal transduction countsGenes 30 · HK 12 · RR 17CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderLysobacteralesFamilyLysobacteraceaeGenusXylella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Lysobacterales6Lysobacteraceae7Xylella
Related genes
Preview from the same derived genome key