1 PAS_4#1
23-110 aa · 88 aa · 17.3% of protein
Raw token
PAS_4:23:0.0000000456:110:97:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XF_RS03605
Histidine kinase, Classic
Xylella fastidiosa 9a5c · GCF_000006725
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006725#XF_RS03605Stable P2CS identifier used across views.
GenomeGCF_000006725Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xylella
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_3HisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage344 / 510 aa (67.5%)Merged over positioned domains only.
Domain description1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation4 items
2 PAS_3#2
144-226 aa · 83 aa · 16.3% of protein
Raw token
PAS_3:144:0.00000000000104:226:85:893 HisKA#3
262-324 aa · 63 aa · 12.4% of protein
Raw token
HisKA:262:2.35e-16:324:63:644 HATPase_c#4
373-482 aa · 110 aa · 21.6% of protein
Raw token
HATPase_c:373:4.29e-30:482:110:109- Raw architecture: PAS_4:23:0.0000000456:110:97:110#PAS_3:144:0.00000000000104:226:85:89#HisKA:262:2.35e-16:324:63:64#HATPase_c:373:4.29e-30:482:110:109
- Domain description: 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006725::NC_002488.3::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span814283-815959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXF0853%2CXF_0853RefSeq proteinWP_023908050.1
Context group ID
GCF_000006725::NC_002488.3::G00005Context members
XF_RS03605
Partner locus tags
XF_RS03605
Partner old locus tags
XF0853%2CXF_0853
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_023908050.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXF_RS03605Primary locus identifier stored in the genes table.
Old locus tagXF0853%2CXF_0853Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_002488.3Sequence record reported by the local genomic context database.
Genomic interval814 283-815 959 nt1 677 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span814 283-815 959 ntGCF_000006725::NC_002488.3::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006725::NC_002488.3::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002488.3All displayed genes belong to this local TCS context.
Neighborhood span814 283-815 959 nt1 677 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
814 283 nt815 959 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
XF_RS03605GCF_000006725#XF_RS03605
HKClassicCurrent focus
814 283-815 959 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006725#XF_RS03605The current gene is the representative for this cluster.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1428026
Simplified PFAM architecture for HKOC_1428026
PFAM domain coverage: 281 / 510 aa (55.1%)
1 aa510 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[127-234] | HisKA[262-324] | HATPase_c[373-482]
- Domain count: 3
- Matched identifier: HKOC_1428026
- Positioned domains: PAS_4 127-234 ; HisKA 262-324 ; HATPase_c 373-482
Cluster members and taxonomy
Representative gene: GCF_000006725#XF_RS03605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 160 492 · GCF_000006725
AssemblyASM672v1 · Complete Genomehaploid
Genome composition2 731 750 bp · 52,5% GCXylella fastidiosa 9a5c
Signal transduction countsGenes 30 · HK 12 · RR 17CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderLysobacteralesFamilyLysobacteraceaeGenusXylella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Lysobacterales6Lysobacteraceae7Xylella
Related genes
Preview from the same derived genome key