1 Response_reg#1
22-133 aa · 112 aa · 19.8% of protein
Raw token
Response_reg:22:5.84e-28:133:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XF_RS01675
Response regulator, VieA family
Xylella fastidiosa 9a5c · GCF_000006725
ClassRRTypeVieALength566 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006725#XF_RS01675Stable P2CS identifier used across views.
GenomeGCF_000006725Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xylella
Domain signature
Compact overview inferred from the domain field
Response_regEAL
Protein length566 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage338 / 566 aa (59.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa566 aa
Domain-by-domain annotation2 items
2 EAL#2
325-550 aa · 226 aa · 39.9% of protein
Raw token
EAL:325:3.36e-35:550:227:235- Raw architecture: Response_reg:22:5.84e-28:133:112:111#EAL:325:3.36e-35:550:227:235
- Domain description: 1 Response_reg,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006725::NC_002488.3::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span409978-411678Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXF0401%2CXF_0401RefSeq proteinWP_010892931.1
Context group ID
GCF_000006725::NC_002488.3::G00003Context members
XF_RS01675
Partner locus tags
XF_RS01675
Partner old locus tags
XF0401%2CXF_0401
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010892931.1Primary protein accession used for annex mappings.
UniProt accessionQ9PGA1Primary UniProt accession resolved in the annex database.
UniProt IDQ9PGA1_XYLFADisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXF_RS01675Primary locus identifier stored in the genes table.
Old locus tagXF0401%2CXF_0401Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_002488.3Sequence record reported by the local genomic context database.
Genomic interval409 978-411 678 nt1 701 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span409 978-411 678 ntGCF_000006725::NC_002488.3::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006725::NC_002488.3::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002488.3All displayed genes belong to this local TCS context.
Neighborhood span409 978-411 678 nt1 701 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
409 978 nt411 678 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
XF_RS01675GCF_000006725#XF_RS01675
RRVieACurrent focus
409 978-411 678 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006725#XF_RS01675The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0055299
Simplified PFAM architecture for RROC_0055299
PFAM domain coverage: 485 / 566 aa (85.7%)
1 aa566 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[22-133] | GGDEF[161-306] | EAL[325-551]
- Domain count: 3
- Matched identifier: RROC_0055299
- Positioned domains: Response_reg 22-133 ; Response_reg 22-133 ; GGDEF 161-306 ; GGDEF 161-306 ; EAL 325-551 ; EAL 325-551
Cluster members and taxonomy
Representative gene: GCF_000006725#XF_RS01675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 160 492 · GCF_000006725
AssemblyASM672v1 · Complete Genomehaploid
Genome composition2 731 750 bp · 52,5% GCXylella fastidiosa 9a5c
Signal transduction countsGenes 30 · HK 12 · RR 17CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderLysobacteralesFamilyLysobacteraceaeGenusXylella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Lysobacterales6Lysobacteraceae7Xylella
Related genes
Preview from the same derived genome key