1 Response_reg#1
11-122 aa · 112 aa · 47.3% of protein
Raw token
Response_reg:11:6.19e-34:122:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XF_RS10135
Response regulator OmpR family
Xylella fastidiosa 9a5c · GCF_000006725
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006725#XF_RS10135Stable P2CS identifier used across views.
GenomeGCF_000006725Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xylella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:155:2.22e-18:229:77:77- Raw architecture: Response_reg:11:6.19e-34:122:112:111#Trans_reg_C:155:2.22e-18:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006725::NC_002488.3::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2215260-2215973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXF2336%2CXF_2336RefSeq proteinWP_004085858.1
Context group ID
GCF_000006725::NC_002488.3::G00013Context members
XF_RS10135
Partner locus tags
XF_RS10135
Partner old locus tags
XF2336%2CXF_2336
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004085858.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ5R0K9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ5R0K9_XYLFSDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXF_RS10135Primary locus identifier stored in the genes table.
Old locus tagXF2336%2CXF_2336Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_002488.3Sequence record reported by the local genomic context database.
Genomic interval2 215 260-2 215 973 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 215 260-2 215 973 ntGCF_000006725::NC_002488.3::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006725::NC_002488.3::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002488.3All displayed genes belong to this local TCS context.
Neighborhood span2 215 260-2 215 973 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 215 260 nt2 215 973 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
XF_RS10135GCF_000006725#XF_RS10135
RROmpRCurrent focus
2 215 260-2 215 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006725#XF_RS10135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961336
Simplified PFAM architecture for RROC_0961336
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-121] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_0961336
- Positioned domains: Response_reg 11-121 ; Response_reg 11-121 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_000006725#XF_RS10135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 160 492 · GCF_000006725
AssemblyASM672v1 · Complete Genomehaploid
Genome composition2 731 750 bp · 52,5% GCXylella fastidiosa 9a5c
Signal transduction countsGenes 30 · HK 12 · RR 17CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderLysobacteralesFamilyLysobacteraceaeGenusXylella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Lysobacterales6Lysobacteraceae7Xylella
Related genes
Preview from the same derived genome key