1 HisKA#1
189-254 aa · 66 aa · 9.2% of protein
Raw token
HisKA:189:4.37e-19:254:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XF_RS04715
Histidine kinase, Unorthodox
Xylella fastidiosa 9a5c · GCF_000006725
ClassHKTypeUnorthodoxLength717 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006725#XF_RS04715Stable P2CS identifier used across views.
GenomeGCF_000006725Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xylella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length717 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage373 / 717 aa (52.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa717 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
301-417 aa · 117 aa · 16.3% of protein
Raw token
HATPase_c:301:4.32e-26:417:117:1093 Response_reg#3
459-573 aa · 115 aa · 16.0% of protein
Raw token
Response_reg:459:2.96e-24:573:115:1114 Hpt#4
625-699 aa · 75 aa · 10.5% of protein
Raw token
Hpt:625:0.00000000101:699:78:84- Raw architecture: HisKA:189:4.37e-19:254:66:64#HATPase_c:301:4.32e-26:417:117:109#Response_reg:459:2.96e-24:573:115:111#Hpt:625:0.00000000101:699:78:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006725::NC_002488.3::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1069777-1071930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXF1114%2CXF_1114RefSeq proteinWP_023906822.1
Context group ID
GCF_000006725::NC_002488.3::G00007Context members
XF_RS04715
Partner locus tags
XF_RS04715
Partner old locus tags
XF1114%2CXF_1114
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_023906822.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXF_RS04715Primary locus identifier stored in the genes table.
Old locus tagXF1114%2CXF_1114Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_002488.3Sequence record reported by the local genomic context database.
Genomic interval1 069 777-1 071 930 nt2 154 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 069 777-1 071 930 ntGCF_000006725::NC_002488.3::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006725::NC_002488.3::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002488.3All displayed genes belong to this local TCS context.
Neighborhood span1 069 777-1 071 930 nt2 154 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 069 777 nt1 071 930 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
XF_RS04715GCF_000006725#XF_RS04715
HKUnorthodoxCurrent focus
1 069 777-1 071 930 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006725#XF_RS04715The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Hpt4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0738379
Simplified PFAM architecture for HKOC_0738379
PFAM domain coverage: 370 / 717 aa (51.6%)
1 aa717 aa
HisKAHATPase_cResponse_regHpt
- Simplified architecture: HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HisKA[189-254] | HATPase_c[302-417] | Response_reg[459-571] | Hpt[624-698]
- Domain count: 4
- Matched identifier: HKOC_0738379
- Positioned domains: HisKA 189-254 ; HATPase_c 302-417 ; Response_reg 459-571 ; Hpt 624-698
Cluster members and taxonomy
Representative gene: GCF_000006725#XF_RS04715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 160 492 · GCF_000006725
AssemblyASM672v1 · Complete Genomehaploid
Genome composition2 731 750 bp · 52,5% GCXylella fastidiosa 9a5c
Signal transduction countsGenes 30 · HK 12 · RR 17CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderLysobacteralesFamilyLysobacteraceaeGenusXylella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Lysobacterales6Lysobacteraceae7Xylella
Related genes
Preview from the same derived genome key