1 HAMP#1
193-261 aa · 69 aa · 14.4% of protein
Raw token
HAMP:193:0.00000702:261:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XF_RS01635
Histidine kinase, Classic
Xylella fastidiosa 9a5c · GCF_000006725
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006725#XF_RS01635Stable P2CS identifier used across views.
GenomeGCF_000006725Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xylella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage229 / 480 aa (47.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-313 aa · 49 aa · 10.2% of protein
Raw token
HisKA:265:0.000000789:313:53:643 HATPase_c#3
367-477 aa · 111 aa · 23.1% of protein
Raw token
HATPase_c:367:2.05e-21:477:115:109- Raw architecture: HAMP:193:0.00000702:261:69:69#HisKA:265:0.000000789:313:53:64#HATPase_c:367:2.05e-21:477:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006725::NC_002488.3::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span400823-402970Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXF0390%2CXF_0390RefSeq proteinWP_171817042.1
Context group ID
GCF_000006725::NC_002488.3::G00002Context members
XF_RS01630XF_RS01635
Partner locus tags
XF_RS01630XF_RS01635
Partner old locus tags
XF0389%2CXF_0389XF0390%2CXF_0390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_171817042.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC8ABF6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC8ABF6_XYLFSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXF_RS01635Primary locus identifier stored in the genes table.
Old locus tagXF0390%2CXF_0390Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_002488.3Sequence record reported by the local genomic context database.
Genomic interval401 528-402 970 nt1 443 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span400 823-402 970 ntGCF_000006725::NC_002488.3::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006725::NC_002488.3::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_002488.3All displayed genes belong to this local TCS context.
Neighborhood span400 823-402 970 nt2 148 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
400 823 nt402 970 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XF_RS01630GCF_000006725#XF_RS01630
RROmpR
400 823-401 506 nt · Forward (+)
XF_RS01635GCF_000006725#XF_RS01635
HKClassicCurrent focus
401 528-402 970 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006725#XF_RS01635The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1618998
Simplified PFAM architecture for HKOC_1618998
PFAM domain coverage: 110 / 480 aa (22.9%)
1 aa480 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[369-478]
- Domain count: 1
- Matched identifier: HKOC_1618998
- Positioned domains: HATPase_c 369-478
Cluster members and taxonomy
Representative gene: GCF_000006725#XF_RS01635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 160 492 · GCF_000006725
AssemblyASM672v1 · Complete Genomehaploid
Genome composition2 731 750 bp · 52,5% GCXylella fastidiosa 9a5c
Signal transduction countsGenes 30 · HK 12 · RR 17CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderLysobacteralesFamilyLysobacteraceaeGenusXylella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Lysobacterales6Lysobacteraceae7Xylella
Related genes
Preview from the same derived genome key