1 MEDS#1
24-173 aa · 150 aa · 25.9% of protein
Raw token
MEDS:24:2.85e-23:173:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS21205
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS21205Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
MEDSHisKAHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage311 / 580 aa (53.6%)Merged over positioned domains only.
Domain description1 MEDS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 HisKA#2
362-418 aa · 57 aa · 9.8% of protein
Raw token
HisKA:362:0.00000000000548:418:58:643 HATPase_c#3
467-570 aa · 104 aa · 17.9% of protein
Raw token
HATPase_c:467:9.74e-32:570:107:109- Raw architecture: MEDS:24:2.85e-23:173:156:160#HisKA:362:0.00000000000548:418:58:64#HATPase_c:467:9.74e-32:570:107:109
- Domain description: 1 MEDS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00025
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span1971350-1975149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_18080RefSeq proteinWP_012959019.1
Context group ID
GCF_000005825::NC_013791.2::G00025Context members
BPOF4_RS21205BPOF4_RS21210
Partner locus tags
BPOF4_RS21205BPOF4_RS21210
Partner old locus tags
BpOF4_18080BpOF4_18085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959019.1Primary protein accession used for annex mappings.
UniProt accessionD3FS22Primary UniProt accession resolved in the annex database.
UniProt IDD3FS22_ALKPODisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS21205Primary locus identifier stored in the genes table.
Old locus tagBpOF4_18080Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 971 350-1 973 092 nt1 743 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 971 350-1 975 149 ntGCF_000005825::NC_013791.2::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 971 350-1 975 149 nt3 800 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 971 350 nt1 975 149 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS21205GCF_000005825#BPOF4_RS21205
HKClassicCurrent focus
1 971 350-1 973 092 nt · Forward (+)
BPOF4_RS21210GCF_000005825#BPOF4_RS21210
HKClassic
1 973 383-1 975 149 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS21205The current gene is the representative for this cluster.
PFAM architectureMEDS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1161700
Simplified PFAM architecture for HKOC_1161700
PFAM domain coverage: 311 / 580 aa (53.6%)
1 aa580 aa
MEDSHisKAHATPase_c
- Simplified architecture: MEDS + HisKA + HATPase_c
- Raw architecture: MEDS[24-173] | HisKA[362-420] | HATPase_c[467-568]
- Domain count: 3
- Matched identifier: HKOC_1161700
- Positioned domains: MEDS 24-173 ; HisKA 362-420 ; HATPase_c 467-568
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS21205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key