1 Response_reg#1
8-117 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:8:5.14e-24:117:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS01605
Response regulator, unclassified
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeunclassifiedLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS01605Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regCitTHTH_ASNC
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage201 / 237 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 CitT,1 HTH_ASNCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation3 items
2 CitT#2
138-171 aa · 34 aa · 14.3% of protein
Raw token
CitT:138:0.0000944:171:34:303 HTH_ASNC#3
173-229 aa · 57 aa · 24.1% of protein
Raw token
HTH_ASNC:173:0.0000671:229:62:108- Raw architecture: Response_reg:8:5.14e-24:117:110:111#CitT:138:0.0000944:171:34:30#HTH_ASNC:173:0.0000671:229:62:108
- Domain description: 1 Response_reg,1 CitT,1 HTH_ASNC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span296152-296865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_09400RefSeq proteinWP_012957301.1
Context group ID
GCF_000005825::NC_013791.2::G00001Context members
BPOF4_RS01605
Partner locus tags
BPOF4_RS01605
Partner old locus tags
BpOF4_09400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012957301.1Primary protein accession used for annex mappings.
UniProt accessionD3FSG7Primary UniProt accession resolved in the annex database.
UniProt IDD3FSG7_ALKPODisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS01605Primary locus identifier stored in the genes table.
Old locus tagBpOF4_09400Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval296 152-296 865 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span296 152-296 865 ntGCF_000005825::NC_013791.2::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span296 152-296 865 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
296 152 nt296 865 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS01605GCF_000005825#BPOF4_RS01605
RRunclassifiedCurrent focus
296 152-296 865 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS01605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961335
Simplified PFAM architecture for RROC_0961335
PFAM domain coverage: 161 / 237 aa (67.9%)
1 aa237 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[8-120] | HTH_64[188-235]
- Domain count: 2
- Matched identifier: RROC_0961335
- Positioned domains: Response_reg 8-120 ; Response_reg 8-120 ; HTH_64 188-235 ; HTH_64 188-235
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS01605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key