1 HAMP#1
165-232 aa · 68 aa · 14.7% of protein
Raw token
HAMP:165:0.000000000000187:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS19675
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS19675Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 464 aa (52.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-303 aa · 68 aa · 14.7% of protein
Raw token
HisKA:236:1.34e-17:303:68:643 HATPase_c#3
352-460 aa · 109 aa · 23.5% of protein
Raw token
HATPase_c:352:3.14e-39:460:109:109- Raw architecture: HAMP:165:0.000000000000187:232:68:69#HisKA:236:1.34e-17:303:68:64#HATPase_c:352:3.14e-39:460:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013792.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96281-98392Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_20474RefSeq proteinWP_012961009.1
Context group ID
GCF_000005825::NC_013792.1::G00046Context members
BPOF4_RS19675BPOF4_RS19680
Partner locus tags
BPOF4_RS19675BPOF4_RS19680
Partner old locus tags
BpOF4_20474BpOF4_20479
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012961009.1Primary protein accession used for annex mappings.
UniProt accessionD3G164Primary UniProt accession resolved in the annex database.
UniProt IDD3G164_ALKPODisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS19675Primary locus identifier stored in the genes table.
Old locus tagBpOF4_20474Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013792.1Sequence record reported by the local genomic context database.
Genomic interval96 281-97 675 nt1 395 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 281-98 392 ntGCF_000005825::NC_013792.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013792.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013792.1All displayed genes belong to this local TCS context.
Neighborhood span96 281-98 392 nt2 112 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 281 nt98 392 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS19675GCF_000005825#BPOF4_RS19675
HKClassicCurrent focus
96 281-97 675 nt · Reverse (-)
BPOF4_RS19680GCF_000005825#BPOF4_RS19680
RROmpR
97 694-98 392 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS19675The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1783625
Simplified PFAM architecture for HKOC_1783625
PFAM domain coverage: 230 / 464 aa (49.6%)
1 aa464 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[180-231] | HisKA[236-303] | HATPase_c[352-461]
- Domain count: 3
- Matched identifier: HKOC_1783625
- Positioned domains: HAMP 180-231 ; HisKA 236-303 ; HATPase_c 352-461
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS19675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key