1 HAMP#1
134-203 aa · 70 aa · 16.0% of protein
Raw token
HAMP:134:0.00000000000061:203:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS17535
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS17535Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 438 aa (56.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HisKA#2
207-273 aa · 67 aa · 15.3% of protein
Raw token
HisKA:207:0.000000000000149:273:67:643 HATPase_c#3
320-429 aa · 110 aa · 25.1% of protein
Raw token
HATPase_c:320:1.94e-32:429:110:109- Raw architecture: HAMP:134:0.00000000000061:203:70:69#HisKA:207:0.000000000000149:273:67:64#HATPase_c:320:1.94e-32:429:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3523034-3525135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_06200RefSeq proteinWP_238446472.1
Context group ID
GCF_000005825::NC_013791.2::G00041Context members
BPOF4_RS17530BPOF4_RS17535
Partner locus tags
BPOF4_RS17530BPOF4_RS17535
Partner old locus tags
BpOF4_06195BpOF4_06200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_238446472.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS17535Primary locus identifier stored in the genes table.
Old locus tagBpOF4_06200Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval3 523 819-3 525 135 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 523 034-3 525 135 ntGCF_000005825::NC_013791.2::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span3 523 034-3 525 135 nt2 102 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 523 034 nt3 525 135 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS17530GCF_000005825#BPOF4_RS17530
RROmpR
3 523 034-3 523 723 nt · Forward (+)
BPOF4_RS17535GCF_000005825#BPOF4_RS17535
HKClassicCurrent focus
3 523 819-3 525 135 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS17535The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2092657
Simplified PFAM architecture for HKOC_2092657
PFAM domain coverage: 228 / 438 aa (52.1%)
1 aa438 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[153-202] | HisKA[207-273] | HATPase_c[320-430]
- Domain count: 3
- Matched identifier: HKOC_2092657
- Positioned domains: HAMP 153-202 ; HisKA 207-273 ; HATPase_c 320-430
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS17535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key