1 Response_reg#1
9-121 aa · 113 aa · 48.5% of protein
Raw token
Response_reg:9:3.16e-34:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS17065
Response regulator NarL family
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeNarLLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS17065Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 233 aa (73.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
167-224 aa · 58 aa · 24.9% of protein
Raw token
HTH_LUXR:167:6.15e-23:224:58:58- Raw architecture: Response_reg:9:3.16e-34:121:113:111#HTH_LUXR:167:6.15e-23:224:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3395570-3397486Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_05695RefSeq proteinWP_012960474.1
Context group ID
GCF_000005825::NC_013791.2::G00040Context members
BPOF4_RS17065BPOF4_RS17070
Partner locus tags
BPOF4_RS17065BPOF4_RS17070
Partner old locus tags
BpOF4_05695BpOF4_05700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012960474.1Primary protein accession used for annex mappings.
UniProt accessionD3FZF9Primary UniProt accession resolved in the annex database.
UniProt IDD3FZF9_ALKPODisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS17065Primary locus identifier stored in the genes table.
Old locus tagBpOF4_05695Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval3 395 570-3 396 271 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 395 570-3 397 486 ntGCF_000005825::NC_013791.2::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span3 395 570-3 397 486 nt1 917 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 395 570 nt3 397 486 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS17065GCF_000005825#BPOF4_RS17065
RRNarLCurrent focus
3 395 570-3 396 271 nt · Reverse (-)
BPOF4_RS17070GCF_000005825#BPOF4_RS17070
HKClassic
3 396 362-3 397 486 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS17065The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080342
Simplified PFAM architecture for RROC_1080342
PFAM domain coverage: 169 / 233 aa (72.5%)
1 aa233 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-121] | GerE[169-224]
- Domain count: 2
- Matched identifier: RROC_1080342
- Positioned domains: Response_reg 9-121 ; Response_reg 9-121 ; GerE 169-224 ; GerE 169-224
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS17065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key