1 His_kinase#1
375-454 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:375:3.12e-31:454:81:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS13780
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength582 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS13780Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length582 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 582 aa (30.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa582 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
474-573 aa · 100 aa · 17.2% of protein
Raw token
HATPase_c:474:1.12e-17:573:104:109- Raw architecture: His_kinase:375:3.12e-31:454:81:80#HATPase_c:474:1.12e-17:573:104:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2703184-2705659Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_02245RefSeq proteinWP_012959794.1
Context group ID
GCF_000005825::NC_013791.2::G00033Context members
BPOF4_RS13775BPOF4_RS13780
Partner locus tags
BPOF4_RS13775BPOF4_RS13780
Partner old locus tags
BpOF4_02240BpOF4_02245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959794.1Primary protein accession used for annex mappings.
UniProt accessionD3FVK1Primary UniProt accession resolved in the annex database.
UniProt IDD3FVK1_ALKPODisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS13780Primary locus identifier stored in the genes table.
Old locus tagBpOF4_02245Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval2 703 911-2 705 659 nt1 749 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 703 184-2 705 659 ntGCF_000005825::NC_013791.2::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span2 703 184-2 705 659 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 703 184 nt2 705 659 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS13775GCF_000005825#BPOF4_RS13775
RRLytTR
2 703 184-2 703 918 nt · Reverse (-)
BPOF4_RS13780GCF_000005825#BPOF4_RS13780
HKClassicCurrent focus
2 703 911-2 705 659 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS13780The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1152401
Simplified PFAM architecture for HKOC_1152401
PFAM domain coverage: 363 / 582 aa (62.4%)
1 aa582 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[27-207] | His_kinase[375-454] | HATPase_c[474-575]
- Domain count: 3
- Matched identifier: HKOC_1152401
- Positioned domains: 5TM-5TMR_LYT 27-207 ; His_kinase 375-454 ; HATPase_c 474-575
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS13780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key