1 HisKA_3#1
179-242 aa · 64 aa · 17.1% of protein
Raw token
HisKA_3:179:0.00000000000000216:242:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS09715
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength374 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS09715Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage135 / 374 aa (36.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa374 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
283-353 aa · 71 aa · 19.0% of protein
Raw token
HATPase_c:283:0.000000535:353:89:109- Raw architecture: HisKA_3:179:0.00000000000000216:242:67:68#HATPase_c:283:0.000000535:353:89:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1920916-1922674Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_17840RefSeq proteinWP_012958971.1
Context group ID
GCF_000005825::NC_013791.2::G00024Context members
BPOF4_RS09710BPOF4_RS09715
Partner locus tags
BPOF4_RS09710BPOF4_RS09715
Partner old locus tags
BpOF4_17835BpOF4_17840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958971.1Primary protein accession used for annex mappings.
UniProt accessionD3FRL8Primary UniProt accession resolved in the annex database.
UniProt IDD3FRL8_ALKPODisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS09715Primary locus identifier stored in the genes table.
Old locus tagBpOF4_17840Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 921 550-1 922 674 nt1 125 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 920 916-1 922 674 ntGCF_000005825::NC_013791.2::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 920 916-1 922 674 nt1 759 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 920 916 nt1 922 674 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS09710GCF_000005825#BPOF4_RS09710
RRNarL
1 920 916-1 921 548 nt · Reverse (-)
BPOF4_RS09715GCF_000005825#BPOF4_RS09715
HKClassicCurrent focus
1 921 550-1 922 674 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS09715The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2657446
Simplified PFAM architecture for HKOC_2657446
PFAM domain coverage: 63 / 374 aa (16.8%)
1 aa374 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[179-241]
- Domain count: 1
- Matched identifier: HKOC_2657446
- Positioned domains: HisKA_3 179-241
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS09715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key