1 HisKA#1
163-221 aa · 59 aa · 15.6% of protein
Raw token
HisKA:163:0.000000000000022:221:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS05890
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS05890Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 378 aa (44.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
266-373 aa · 108 aa · 28.6% of protein
Raw token
HATPase_c:266:9.7e-26:373:111:109- Raw architecture: HisKA:163:0.000000000000022:221:60:64#HATPase_c:266:9.7e-26:373:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1177105-1178241Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_13785RefSeq proteinWP_012958170.1
Context group ID
GCF_000005825::NC_013791.2::G00016Context members
BPOF4_RS05890
Partner locus tags
BPOF4_RS05890
Partner old locus tags
BpOF4_13785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958170.1Primary protein accession used for annex mappings.
UniProt accessionD3FY49Primary UniProt accession resolved in the annex database.
UniProt IDD3FY49_ALKPODisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS05890Primary locus identifier stored in the genes table.
Old locus tagBpOF4_13785Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 177 105-1 178 241 nt1 137 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 177 105-1 178 241 ntGCF_000005825::NC_013791.2::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 177 105-1 178 241 nt1 137 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 177 105 nt1 178 241 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS05890GCF_000005825#BPOF4_RS05890
HKClassicCurrent focus
1 177 105-1 178 241 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS05890The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2626563
Simplified PFAM architecture for HKOC_2626563
PFAM domain coverage: 163 / 378 aa (43.1%)
1 aa378 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[166-222] | HATPase_c[268-373]
- Domain count: 2
- Matched identifier: HKOC_2626563
- Positioned domains: HisKA 166-222 ; HATPase_c 268-373
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS05890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key