1 HAMP#1
147-217 aa · 71 aa · 15.6% of protein
Raw token
HAMP:147:0.0000000268:217:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS04480
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS04480Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 454 aa (56.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
222-282 aa · 61 aa · 13.4% of protein
Raw token
HisKA:222:4.08e-20:282:61:643 HATPase_c#3
331-454 aa · 124 aa · 27.3% of protein
Raw token
HATPase_c:331:3.4e-27:454:124:109- Raw architecture: HAMP:147:0.0000000268:217:71:69#HisKA:222:4.08e-20:282:61:64#HATPase_c:331:3.4e-27:454:124:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span903866-905999Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_12325RefSeq proteinWP_238446507.1
Context group ID
GCF_000005825::NC_013791.2::G00011Context members
BPOF4_RS04475BPOF4_RS04480
Partner locus tags
BPOF4_RS04475BPOF4_RS04480
Partner old locus tags
BpOF4_12320BpOF4_12325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_238446507.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS04480Primary locus identifier stored in the genes table.
Old locus tagBpOF4_12325Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval904 635-905 999 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span903 866-905 999 ntGCF_000005825::NC_013791.2::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span903 866-905 999 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
903 866 nt905 999 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS04475GCF_000005825#BPOF4_RS04475
RROmpR
903 866-904 606 nt · Forward (+)
BPOF4_RS04480GCF_000005825#BPOF4_RS04480
HKClassicCurrent focus
904 635-905 999 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS16050Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1744378
Simplified PFAM architecture for HKOC_1744378
PFAM domain coverage: 184 / 468 aa (39.3%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-296] | HATPase_c[345-467]
- Domain count: 2
- Matched identifier: HKOC_1744378
- Positioned domains: HisKA 236-296 ; HATPase_c 345-467
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS16050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key