1 Response_reg#1
4-114 aa · 111 aa · 55.8% of protein
Raw token
Response_reg:4:1.14e-23:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS02225
Response regulator NarL family
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeNarLLength199 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS02225Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 199 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
135-192 aa · 58 aa · 29.1% of protein
Raw token
HTH_LUXR:135:1.53e-19:192:58:58- Raw architecture: Response_reg:4:1.14e-23:114:113:111#HTH_LUXR:135:1.53e-19:192:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span432700-434431Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_10035RefSeq proteinWP_012957428.1
Context group ID
GCF_000005825::NC_013791.2::G00003Context members
BPOF4_RS02220BPOF4_RS02225
Partner locus tags
BPOF4_RS02220BPOF4_RS02225
Partner old locus tags
BpOF4_10030BpOF4_10035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012957428.1Primary protein accession used for annex mappings.
UniProt accessionD3FTI9Primary UniProt accession resolved in the annex database.
UniProt IDD3FTI9_ALKPODisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS02225Primary locus identifier stored in the genes table.
Old locus tagBpOF4_10035Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval433 832-434 431 nt600 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span432 700-434 431 ntGCF_000005825::NC_013791.2::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span432 700-434 431 nt1 732 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
432 700 nt434 431 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS02220GCF_000005825#BPOF4_RS02220
HKClassic
432 700-433 830 nt · Forward (+)
BPOF4_RS02225GCF_000005825#BPOF4_RS02225
RRNarLCurrent focus
433 832-434 431 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS02225The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2143427
Simplified PFAM architecture for RROC_2143427
PFAM domain coverage: 164 / 199 aa (82.4%)
1 aa199 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-113] | GerE[137-190]
- Domain count: 2
- Matched identifier: RROC_2143427
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; GerE 137-190 ; GerE 137-190
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS02225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key