1 HisKA_3#1
179-242 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:179:5.79e-26:242:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS02220
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS02220Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 376 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
287-366 aa · 80 aa · 21.3% of protein
Raw token
HATPase_c:287:0.00000000000213:366:97:109- Raw architecture: HisKA_3:179:5.79e-26:242:64:68#HATPase_c:287:0.00000000000213:366:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span432700-434431Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_10030RefSeq proteinWP_012957427.1
Context group ID
GCF_000005825::NC_013791.2::G00003Context members
BPOF4_RS02220BPOF4_RS02225
Partner locus tags
BPOF4_RS02220BPOF4_RS02225
Partner old locus tags
BpOF4_10030BpOF4_10035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012957427.1Primary protein accession used for annex mappings.
UniProt accessionD3FTI8Primary UniProt accession resolved in the annex database.
UniProt IDD3FTI8_ALKPODisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS02220Primary locus identifier stored in the genes table.
Old locus tagBpOF4_10030Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval432 700-433 830 nt1 131 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span432 700-434 431 ntGCF_000005825::NC_013791.2::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span432 700-434 431 nt1 732 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
432 700 nt434 431 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS02220GCF_000005825#BPOF4_RS02220
HKClassicCurrent focus
432 700-433 830 nt · Forward (+)
BPOF4_RS02225GCF_000005825#BPOF4_RS02225
RRNarL
433 832-434 431 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS02220The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2641395
Simplified PFAM architecture for HKOC_2641395
PFAM domain coverage: 300 / 376 aa (79.8%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[1-151] | HisKA_3[179-244] | HATPase_c[284-366]
- Domain count: 3
- Matched identifier: HKOC_2641395
- Positioned domains: DesK_N 1-151 ; HisKA_3 179-244 ; HATPase_c 284-366
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS02220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key