Gene detail

BMYCO0001_RS11635

Histidine kinase, Classic

Bacillus mycoides DSM 2048 · GCF_000003925

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_000003925#BMYCO0001_RS11635Stable P2CS identifier used across views.

GenomeGCF_000003925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_1079599Run 6 · 81 sequences · id 100% · cov 80% · representative

External referencesWP_002127645.1 · R8N361 · MIST4 BMYCO0001_RS11635RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

PASPAS_4HisKAHATPase_c

Protein length595 aaLength used to scale native and Biotite-like views.

Annotated domains44 with usable coordinates.

Domain coverage359 / 595 aa (60.3%)Merged over positioned domains only.

Domain description1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa595 aa

Domain-by-domain annotation4 items

1 PAS#1

113-201 aa · 89 aa · 15.0% of protein

Raw tokenPAS:113:0.00000000000403:201:89:113

2 PAS_4#2

245-348 aa · 104 aa · 17.5% of protein

Raw tokenPAS_4:245:2.35e-24:348:109:110

3 HisKA#3

362-424 aa · 63 aa · 10.6% of protein

Raw tokenHisKA:362:1.98e-16:424:63:64

4 HATPase_c#4

469-571 aa · 103 aa · 17.3% of protein

Raw tokenHATPase_c:469:3.27e-29:571:106:109

Raw architecture: PAS:113:0.00000000000403:201:89:113#PAS_4:245:2.35e-24:348:109:110#HisKA:362:1.98e-16:424:63:64#HATPase_c:469:3.27e-29:571:106:109
Domain description: 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000003925::NZ_CM000742.1::G00034

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span2345252-2347039Genomic interval covered by the local TCS group.

Identifiers

Old locus tagbmyco0001_23480RefSeq proteinWP_002127645.1

Context group IDGCF_000003925::NZ_CM000742.1::G00034

Context members

BMYCO0001_RS11635

Partner locus tags

BMYCO0001_RS11635

Partner old locus tags

bmyco0001_23480

Partner protein IDs

WP_002127645.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_002127645.1Primary protein accession used for annex mappings.

UniProt accessionR8N361Primary UniProt accession resolved in the annex database.

UniProt IDR8N361_BACCXDisplay identifier provided by UniProt.

GO / PubMed3 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0005524 GO:0000155 GO:0006355

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBMYCO0001_RS11635Primary locus identifier stored in the genes table.

Old locus tagbmyco0001_23480Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.

Genomic interval2 345 252-2 347 039 nt1 788 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span2 345 252-2 347 039 ntGCF_000003925::NZ_CM000742.1::G00034

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000003925::NZ_CM000742.1::G00034

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.

Neighborhood span2 345 252-2 347 039 nt1 788 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

2 345 252 nt2 347 039 nt

+-BMYCO0001_RS11635

Neighborhood gene cards

1 gene in the current local neighborhood.

BMYCO0001_RS11635GCF_000003925#BMYCO0001_RS11635

HKClassicCurrent focus

2 345 252-2 347 039 nt · Forward (+)

Old locus bmyco0001_23480RefSeq WP_002127645.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1079599HK

Run 681 sequencesid 100%cov 80%

PFAM PAS + PAS_4 + HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_1079599Run 6 · HK · 81 sequences

Representative sequenceGCF_000003925#BMYCO0001_RS11635The current gene is the representative for this cluster.

PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_1079599

Simplified PFAM architecture for HKOC_1079599

PFAM domain coverage: 355 / 595 aa (59.7%)

1 aa595 aa

PASPAS_4HisKAHATPase_c

Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
Raw architecture: PAS[113-198] | PAS_4[245-348] | HisKA[364-424] | HATPase_c[469-572]
Domain count: 4
Matched identifier: HKOC_1079599
Positioned domains: PAS 113-198 ; PAS_4 245-348 ; HisKA 364-424 ; HATPase_c 469-572

Cluster members and taxonomy

Representative gene: GCF_000003925#BMYCO0001_RS11635

Displayed with 5 columns and 10 rows per page from the local display config.

Showing members 1 to 50 over 81 total members. Page 1 / 2.

GCF_000003925#BMYCO0001_RS11635 (representative) BMYCO0001_RS11635 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_000290695#IKM_RS14075 IKM_RS14075 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_000290895#III_RS13870 III_RS13870 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_000291315#IEY_RS14325 IEY_RS14325 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_000291335#IEW_RS12265 IEW_RS12265 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_000293605#IEU_RS12315 IEU_RS12315 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_000399045#IKK_RS12040 IKK_RS12040 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_000399425#IK1_RS12920 IK1_RS12920 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_000517985#C174_RS04560 C174_RS04560 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_000832605#BG05_RS18280 BG05_RS18280 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_001044935#TU70_RS04615 TU70_RS04615 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_001484805#M2E15_RS27665 M2E15_RS27665 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_001619505#B4117_RS18375 B4117_RS18375 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_002014505#BW899_RS10970 BW899_RS10970 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_002014695#BLW98_RS26910 BLW98_RS26910 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_002118175#S2E19_RS05995 S2E19_RS05995 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_002118195#S3E15_RS02900 S3E15_RS02900 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_002118205#BTJ44_RS20795 BTJ44_RS20795 · HK · Classic RefSeq: WP_142274159.1	GCF_002146775#BK735_RS12570 BK735_RS12570 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_002200005#CEU84_RS23410 CEU84_RS23410 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_002200135#CEU98_RS13135 CEU98_RS13135 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_002568935#COL71_RS11910 COL71_RS11910 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_002909185#BACWE_RS23315 BACWE_RS23315 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_002909205#BAWEI_RS07130 BAWEI_RS07130 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_007673715#FS506_RS16075 FS506_RS16075 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_008042285#DN408_RS22150 DN408_RS22150 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_015845055#ABE17_RS17815 ABE17_RS17815 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_015845385#ABD98_RS04985 ABD98_RS04985 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_016117755#I6G81_RS13475 I6G81_RS13475 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_016483175#JDS93_RS18370 JDS93_RS18370 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_016651225#JFT97_RS14030 JFT97_RS14030 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018736745#EXW35_RS13460 EXW35_RS13460 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018739365#EXW26_RS13235 EXW26_RS13235 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018739485#EXW63_RS00950 EXW63_RS00950 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018739505#EXW27_RS01770 EXW27_RS01770 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_018740945#EXW50_RS13145 EXW50_RS13145 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018741145#EXW44_RS12030 EXW44_RS12030 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018741565#EXW47_RS13290 EXW47_RS13290 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018742105#J5W00_RS13295 J5W00_RS13295 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018742185#J5V93_RS11950 J5V93_RS11950 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_018742265#EXW42_RS16850 EXW42_RS16850 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018742285#EXW57_RS13160 EXW57_RS13160 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_018751995#EXW36_RS13480 EXW36_RS13480 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_024498035#NPX93_RS14765 NPX93_RS14765 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_025519005#OCF56_RS10055 OCF56_RS10055 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361
GCF_025809295#LCF45_RS13165 LCF45_RS13165 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_029024805#PYW38_RS13240 PYW38_RS13240 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_031316615#FO524_RS13125 FO524_RS13125 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_031317085#FOS05_RS27115 FOS05_RS27115 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361	GCF_031324095#RGW67_RS13705 RGW67_RS13705 · HK · Classic RefSeq: WP_002127645.1 UniProt: R8N361

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925

AssemblyASM392v1 · Chromosomehaploid

Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048

Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key