1 PAS#1
113-201 aa · 89 aa · 15.0% of protein
Raw token
PAS:113:0.00000000000403:201:89:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5W00_RS13295
Histidine kinase, Classic
Bacillus mycoides · GCF_018742105
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018742105#J5W00_RS13295Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PASPAS_4HisKAHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage359 / 595 aa (60.3%)Merged over positioned domains only.
Domain description1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 PAS_4#2
245-348 aa · 104 aa · 17.5% of protein
Raw token
PAS_4:245:2.35e-24:348:109:1103 HisKA#3
362-424 aa · 63 aa · 10.6% of protein
Raw token
HisKA:362:1.98e-16:424:63:644 HATPase_c#4
469-571 aa · 103 aa · 17.3% of protein
Raw token
HATPase_c:469:3.27e-29:571:106:109- Raw architecture: PAS:113:0.00000000000403:201:89:113#PAS_4:245:2.35e-24:348:109:110#HisKA:362:1.98e-16:424:63:64#HATPase_c:469:3.27e-29:571:106:109
- Domain description: 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018742105::NZ_CP072055.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2644900-2646687Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5W00_13295RefSeq proteinWP_002127645.1
Context group ID
GCF_018742105::NZ_CP072055.1::G00041Context members
J5W00_RS13295
Partner locus tags
J5W00_RS13295
Partner old locus tags
J5W00_13295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002127645.1Primary protein accession used for annex mappings.
UniProt accessionR8N361Primary UniProt accession resolved in the annex database.
UniProt IDR8N361_BACCXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5W00_RS13295Primary locus identifier stored in the genes table.
Old locus tagJ5W00_13295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072055.1Sequence record reported by the local genomic context database.
Genomic interval2 644 900-2 646 687 nt1 788 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 644 900-2 646 687 ntGCF_018742105::NZ_CP072055.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742105::NZ_CP072055.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072055.1All displayed genes belong to this local TCS context.
Neighborhood span2 644 900-2 646 687 nt1 788 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 644 900 nt2 646 687 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J5W00_RS13295GCF_018742105#J5W00_RS13295
HKClassicCurrent focus
2 644 900-2 646 687 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS11635Use this link to inspect the representative gene detail.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1079599
Simplified PFAM architecture for HKOC_1079599
PFAM domain coverage: 355 / 595 aa (59.7%)
1 aa595 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[113-198] | PAS_4[245-348] | HisKA[364-424] | HATPase_c[469-572]
- Domain count: 4
- Matched identifier: HKOC_1079599
- Positioned domains: PAS 113-198 ; PAS_4 245-348 ; HisKA 364-424 ; HATPase_c 469-572
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS11635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742105
AssemblyASM1874210v1 · Complete Genomehaploid
Genome composition5 821 266 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key