1 HisKA#1
1-56 aa · 56 aa · 24.7% of protein
Raw token
HisKA:1:0.0000000000000157:56:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTJ44_RS20795
Histidine kinase, Classic
Bacillus mycoides · GCF_002118205
ClassHKTypeClassicLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002118205#BTJ44_RS20795Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 227 aa (70.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
101-203 aa · 103 aa · 45.4% of protein
Raw token
HATPase_c:101:7.62e-29:203:106:109- Raw architecture: HisKA:1:0.0000000000000157:56:56:64#HATPase_c:101:7.62e-29:203:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002118205::NZ_MRWS01000179.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8225-8908Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBTJ44_01713RefSeq proteinWP_142274159.1
Context group ID
GCF_002118205::NZ_MRWS01000179.1::G00015Context members
BTJ44_RS20795
Partner locus tags
BTJ44_RS20795
Partner old locus tags
BTJ44_01713
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142274159.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTJ44_RS20795Primary locus identifier stored in the genes table.
Old locus tagBTJ44_01713Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MRWS01000179.1Sequence record reported by the local genomic context database.
Genomic interval8 225-8 908 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 225-8 908 ntGCF_002118205::NZ_MRWS01000179.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002118205::NZ_MRWS01000179.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MRWS01000179.1All displayed genes belong to this local TCS context.
Neighborhood span8 225-8 908 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 225 nt8 908 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BTJ44_RS20795GCF_002118205#BTJ44_RS20795
HKClassicCurrent focus
8 225-8 908 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS11635Use this link to inspect the representative gene detail.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1079599
Simplified PFAM architecture for HKOC_1079599
PFAM domain coverage: 355 / 595 aa (59.7%)
1 aa595 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[113-198] | PAS_4[245-348] | HisKA[364-424] | HATPase_c[469-572]
- Domain count: 4
- Matched identifier: HKOC_1079599
- Positioned domains: PAS 113-198 ; PAS_4 245-348 ; HisKA 364-424 ; HATPase_c 469-572
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS11635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002118205
AssemblyASM211820v1 · Scaffoldhaploid
Genome composition5 978 754 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 74 · RR 64CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key