1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:1.55e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFY5R_RS01420
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_964271885
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964271885#ACFY5R_RS01420Stable P2CS identifier used across views.
GenomeGCF_964271885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:146:1.88e-24:221:77:77- Raw architecture: Response_reg:4:1.55e-34:112:111:111#Trans_reg_C:146:1.88e-24:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964271885::NZ_OZ186418.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span301331-303177Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964271885::NZ_OZ186418.1::G00006Context members
ACFY5R_RS01420ACFY5R_RS01425
Partner locus tags
ACFY5R_RS01420ACFY5R_RS01425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009263245.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFY5R_RS01420Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OZ186418.1Sequence record reported by the local genomic context database.
Genomic interval301 331-302 002 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span301 331-303 177 ntGCF_964271885::NZ_OZ186418.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964271885::NZ_OZ186418.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OZ186418.1All displayed genes belong to this local TCS context.
Neighborhood span301 331-303 177 nt1 847 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
301 331 nt303 177 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFY5R_RS01420GCF_964271885#ACFY5R_RS01420
RROmpRCurrent focus
301 331-302 002 nt · Forward (+)
ACFY5R_RS01425GCF_964271885#ACFY5R_RS01425
HKClassic
301 990-303 177 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964271885#ACFY5R_RS01420The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637261
Simplified PFAM architecture for RROC_1637261
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1637261
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_964271885#ACFY5R_RS01420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964271885
AssemblyLUMC_Rgna_QRD001 · Complete Genomehaploid
Genome composition3 096 184 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key