1 Response_reg#1
6-118 aa · 113 aa · 22.2% of protein
Raw token
Response_reg:6:4.76e-29:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFY5R_RS01045
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_964271885
ClassRRTypeunclassifiedLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964271885#ACFY5R_RS01045Stable P2CS identifier used across views.
GenomeGCF_964271885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 509 aa (36.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
413-452 aa · 40 aa · 7.9% of protein
Raw token
HTH_AraC:413:0.000000000416:452:40:423 HTH_AraC#3
472-501 aa · 30 aa · 5.9% of protein
Raw token
HTH_AraC:472:0.00000891:501:30:42- Raw architecture: Response_reg:6:4.76e-29:118:113:111#HTH_AraC:413:0.000000000416:452:40:42#HTH_AraC:472:0.00000891:501:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964271885::NZ_OZ186418.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span220989-224235Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964271885::NZ_OZ186418.1::G00004Context members
ACFY5R_RS01045ACFY5R_RS01050
Partner locus tags
ACFY5R_RS01045ACFY5R_RS01050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101879962.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NGE5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NGE5_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFY5R_RS01045Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OZ186418.1Sequence record reported by the local genomic context database.
Genomic interval220 989-222 518 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span220 989-224 235 ntGCF_964271885::NZ_OZ186418.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964271885::NZ_OZ186418.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OZ186418.1All displayed genes belong to this local TCS context.
Neighborhood span220 989-224 235 nt3 247 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 989 nt224 235 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFY5R_RS01045GCF_964271885#ACFY5R_RS01045
RRunclassifiedCurrent focus
220 989-222 518 nt · Reverse (-)
ACFY5R_RS01050GCF_964271885#ACFY5R_RS01050
HKClassic
222 508-224 235 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865435#CDL22_RS11840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0147518
Simplified PFAM architecture for RROC_0147518
PFAM domain coverage: 190 / 509 aa (37.3%)
1 aa509 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-117] | HTH_18[424-501]
- Domain count: 2
- Matched identifier: RROC_0147518
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; HTH_18 424-501 ; HTH_18 424-501
Cluster members and taxonomy
Representative gene: GCF_002865435#CDL22_RS11840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964271885
AssemblyLUMC_Rgna_QRD001 · Complete Genomehaploid
Genome composition3 096 184 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key