1 HisKA#1
133-197 aa · 65 aa · 18.3% of protein
Raw token
HisKA:133:0.00000000000885:197:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESTQ_RS08880
Histidine kinase, Classic
Mediterraneibacter gnavus CC55_001C · GCF_964242535
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964242535#ACESTQ_RS08880Stable P2CS identifier used across views.
GenomeGCF_964242535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 356 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-350 aa · 110 aa · 30.9% of protein
Raw token
HATPase_c:241:1.74e-25:350:111:109- Raw architecture: HisKA:133:0.00000000000885:197:65:64#HATPase_c:241:1.74e-25:350:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964242535::NZ_CAXTAR010000009.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27761-29537Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964242535::NZ_CAXTAR010000009.1::G00025Context members
ACESTQ_RS08875ACESTQ_RS08880
Partner locus tags
ACESTQ_RS08875ACESTQ_RS08880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373221398.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESTQ_RS08880Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXTAR010000009.1Sequence record reported by the local genomic context database.
Genomic interval28 467-29 537 nt1 071 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 761-29 537 ntGCF_964242535::NZ_CAXTAR010000009.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964242535::NZ_CAXTAR010000009.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXTAR010000009.1All displayed genes belong to this local TCS context.
Neighborhood span27 761-29 537 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 761 nt29 537 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESTQ_RS08875GCF_964242535#ACESTQ_RS08875
RROmpR
27 761-28 474 nt · Reverse (-)
ACESTQ_RS08880GCF_964242535#ACESTQ_RS08880
HKClassicCurrent focus
28 467-29 537 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964242535#ACESTQ_RS08880The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2774979
Simplified PFAM architecture for HKOC_2774979
PFAM domain coverage: 281 / 356 aa (78.9%)
1 aa356 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[10-117] | HisKA[132-196] | HATPase_c[242-349]
- Domain count: 3
- Matched identifier: HKOC_2774979
- Positioned domains: DUF4118 10-117 ; HisKA 132-196 ; HATPase_c 242-349
Cluster members and taxonomy
Representative gene: GCF_964242535#ACESTQ_RS08880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_964242535
AssemblyCC00972 · Scaffoldhaploid
Genome composition3 545 778 bp · 42,5% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 82 · HK 40 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key