1 Response_reg#1
13-122 aa · 110 aa · 45.1% of protein
Raw token
Response_reg:13:2e-37:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESWN_RS00165
Response regulator OmpR family
Bifidobacterium adolescentis ATCC 15703 · GCF_964239665
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964239665#ACESWN_RS00165Stable P2CS identifier used across views.
GenomeGCF_964239665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 244 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
163-239 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:163:5.66e-30:239:77:77- Raw architecture: Response_reg:13:2e-37:122:111:111#Trans_reg_C:163:5.66e-30:239:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964239665::NZ_CAXSQS010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38425-40851Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964239665::NZ_CAXSQS010000001.1::G00002Context members
ACESWN_RS00160ACESWN_RS00165
Partner locus tags
ACESWN_RS00160ACESWN_RS00165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270294607.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESWN_RS00165Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXSQS010000001.1Sequence record reported by the local genomic context database.
Genomic interval40 114-40 851 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 425-40 851 ntGCF_964239665::NZ_CAXSQS010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964239665::NZ_CAXSQS010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXSQS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span38 425-40 851 nt2 427 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 425 nt40 851 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESWN_RS00160GCF_964239665#ACESWN_RS00160
HKClassic
38 425-40 107 nt · Reverse (-)
ACESWN_RS00165GCF_964239665#ACESWN_RS00165
RROmpRCurrent focus
40 114-40 851 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406735#ARA23_RS06625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0808039
Simplified PFAM architecture for RROC_0808039
PFAM domain coverage: 185 / 244 aa (75.8%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[165-239]
- Domain count: 2
- Matched identifier: RROC_0808039
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 165-239 ; Trans_reg_C 165-239
Cluster members and taxonomy
Representative gene: GCF_001406735#ARA23_RS06625
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 52 total members. Page 1 / 2.
GCF_001406735#ARA23_RS06625 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 367 928 · GCF_964239665
AssemblyCC00198 · Scaffoldhaploid
Genome composition2 201 327 bp · 59,5% GCBifidobacterium adolescentis ATCC 15703
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key