1 Response_reg#1
1-109 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:1:1.21e-36:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PIG54_RS00945
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_029340105
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029340105#PIG54_RS00945Stable P2CS identifier used across views.
GenomeGCF_029340105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 231 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:150:5.48e-30:226:77:77- Raw architecture: Response_reg:1:1.21e-36:109:110:111#Trans_reg_C:150:5.48e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029340105::NZ_JARJNG010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span190004-192388Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPIG54_00945RefSeq proteinWP_195482267.1
Context group ID
GCF_029340105::NZ_JARJNG010000001.1::G00005Context members
PIG54_RS00940PIG54_RS00945
Partner locus tags
PIG54_RS00940PIG54_RS00945
Partner old locus tags
PIG54_00940PIG54_00945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195482267.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPIG54_RS00945Primary locus identifier stored in the genes table.
Old locus tagPIG54_00945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARJNG010000001.1Sequence record reported by the local genomic context database.
Genomic interval191 693-192 388 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span190 004-192 388 ntGCF_029340105::NZ_JARJNG010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029340105::NZ_JARJNG010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARJNG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span190 004-192 388 nt2 385 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 004 nt192 388 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PIG54_RS00940GCF_029340105#PIG54_RS00940
HKClassic
190 004-191 686 nt · Reverse (-)
PIG54_RS00945GCF_029340105#PIG54_RS00945
RROmpRCurrent focus
191 693-192 388 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406735#ARA23_RS06625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0808039
Simplified PFAM architecture for RROC_0808039
PFAM domain coverage: 185 / 244 aa (75.8%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[165-239]
- Domain count: 2
- Matched identifier: RROC_0808039
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 165-239 ; Trans_reg_C 165-239
Cluster members and taxonomy
Representative gene: GCF_001406735#ARA23_RS06625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_029340105
AssemblyRC7_19002_UC · Contighaploid
Genome composition2 198 272 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 12 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key