1 Response_reg#1
3-113 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:3:4.35e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESN3_RS12375
Response regulator OmpR family
Anaerostipes hadrus · GCF_964239225
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964239225#ACESN3_RS12375Stable P2CS identifier used across views.
GenomeGCF_964239225Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:2.26e-30:220:77:77- Raw architecture: Response_reg:3:4.35e-37:113:111:111#Trans_reg_C:145:2.26e-30:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964239225::NZ_CAXSPF010000024.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39582-41605Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964239225::NZ_CAXSPF010000024.1::G00020Context members
ACESN3_RS12375ACESN3_RS12380
Partner locus tags
ACESN3_RS12375ACESN3_RS12380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008391403.1Primary protein accession used for annex mappings.
UniProt accessionD4MZV8Primary UniProt accession resolved in the annex database.
UniProt IDD4MZV8_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESN3_RS12375Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXSPF010000024.1Sequence record reported by the local genomic context database.
Genomic interval39 582-40 253 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 582-41 605 ntGCF_964239225::NZ_CAXSPF010000024.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964239225::NZ_CAXSPF010000024.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXSPF010000024.1All displayed genes belong to this local TCS context.
Neighborhood span39 582-41 605 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 582 nt41 605 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESN3_RS12375GCF_964239225#ACESN3_RS12375
RROmpRCurrent focus
39 582-40 253 nt · Forward (+)
ACESN3_RS12380GCF_964239225#ACESN3_RS12380
HKClassic
40 250-41 605 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS05670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587886
Simplified PFAM architecture for RROC_1587886
PFAM domain coverage: 187 / 223 aa (83.9%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1587886
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS05670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_964239225
AssemblyCC00691 · Scaffoldhaploid
Genome composition3 259 310 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 49 · HK 23 · RR 24CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key