1 HAMP#1
317-386 aa · 70 aa · 11.4% of protein
Raw token
HAMP:317:0.00000000181:386:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMD54_RS09210
Histidine kinase, Classic
Neglectibacter timonensis · GCF_937966475
ClassHKTypeClassicLength614 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937966475#QMD54_RS09210Stable P2CS identifier used across views.
GenomeGCF_937966475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length614 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 614 aa (42.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa614 aa
Domain-by-domain annotation3 items
2 His_kinase#2
402-478 aa · 77 aa · 12.5% of protein
Raw token
His_kinase:402:2.44e-30:478:77:803 HATPase_c#3
501-611 aa · 111 aa · 18.1% of protein
Raw token
HATPase_c:501:0.0000000000438:611:111:109- Raw architecture: HAMP:317:0.00000000181:386:70:69#His_kinase:402:2.44e-30:478:77:80#HATPase_c:501:0.0000000000438:611:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937966475::NZ_CALCKC010000261.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3380Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937966475::NZ_CALCKC010000261.1::G00026Context members
QMD54_RS09210QMD54_RS09215
Partner locus tags
QMD54_RS09210QMD54_RS09215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_281691451.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMD54_RS09210Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALCKC010000261.1Sequence record reported by the local genomic context database.
Genomic interval1-1 847 nt1 847 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 380 ntGCF_937966475::NZ_CALCKC010000261.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937966475::NZ_CALCKC010000261.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALCKC010000261.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 380 nt3 380 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 380 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMD54_RS09210GCF_937966475#QMD54_RS09210
HKClassicCurrent focus
1-1 847 nt · Forward (+)
QMD54_RS09215GCF_937966475#QMD54_RS09215
RRunclassified
1 923-3 380 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_937966475#QMD54_RS09210The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0993813
Simplified PFAM architecture for HKOC_0993813
PFAM domain coverage: 228 / 614 aa (37.1%)
1 aa614 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[346-386] | His_kinase[403-478] | HATPase_c[501-611]
- Domain count: 3
- Matched identifier: HKOC_0993813
- Positioned domains: HAMP 346-386 ; His_kinase 403-478 ; HATPase_c 501-611
Cluster members and taxonomy
Representative gene: GCF_937966475#QMD54_RS09210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_937966475
AssemblyERR1600698_bin.17_CONCOCT_v1.1_MAG · Contighaploid
Genome composition3 314 458 bp · 53,5% GCNeglectibacter timonensis
Signal transduction countsGenes 86 · HK 43 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key