Gene detail

QOY35_RS00010

Histidine kinase, Classic

Bacillus cereus · GCF_918180685

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_918180685#QOY35_RS00010Stable P2CS identifier used across views.

GenomeGCF_918180685Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_0530673Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_283749809.1 · MIST4 QOY35_RS00010RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

PAS_9HisKAHATPase_c

Protein length820 aaLength used to scale native and Biotite-like views.

Annotated domains44 with usable coordinates.

Domain coverage373 / 820 aa (45.5%)Merged over positioned domains only.

Domain description2 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa820 aa

Domain-by-domain annotation4 items

1 PAS_9#1

340-445 aa · 106 aa · 12.9% of protein

Raw tokenPAS_9:340:0.000000000000502:445:106:102

2 PAS_9#2

478-580 aa · 103 aa · 12.6% of protein

Raw tokenPAS_9:478:0.00000000184:580:105:102

3 HisKA#3

598-659 aa · 62 aa · 7.6% of protein

Raw tokenHisKA:598:0.0000000000000871:659:62:64

4 HATPase_c#4

706-807 aa · 102 aa · 12.4% of protein

Raw tokenHATPase_c:706:8.46e-25:807:105:109

Raw architecture: PAS_9:340:0.000000000000502:445:106:102#PAS_9:478:0.00000000184:580:105:102#HisKA:598:0.0000000000000871:659:62:64#HATPase_c:706:8.46e-25:807:105:109
Domain description: 2 PAS_9,1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_918180685::NZ_CAKJVS010000001.1::G00001

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span866-3328Genomic interval covered by the local TCS group.

Identifiers

RefSeq proteinWP_283749809.1

Context group IDGCF_918180685::NZ_CAKJVS010000001.1::G00001

Context members

QOY35_RS00010

Partner locus tags

QOY35_RS00010

Partner protein IDs

WP_283749809.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_283749809.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagQOY35_RS00010Primary locus identifier stored in the genes table.

Old locus tagUnavailableNo previous locus tag available for this gene.

Contig / repliconNZ_CAKJVS010000001.1Sequence record reported by the local genomic context database.

Genomic interval866-3 328 nt2 463 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span866-3 328 ntGCF_918180685::NZ_CAKJVS010000001.1::G00001

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Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_918180685::NZ_CAKJVS010000001.1::G00001

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CAKJVS010000001.1All displayed genes belong to this local TCS context.

Neighborhood span866-3 328 nt2 463 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

866 nt3 328 nt

+-QOY35_RS00010

Neighborhood gene cards

1 gene in the current local neighborhood.

QOY35_RS00010GCF_918180685#QOY35_RS00010

HKClassicCurrent focus

866-3 328 nt · Reverse (-)

RefSeq WP_283749809.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0530673HK

Run 61 sequencesid 100%cov 80%

PFAM 5TM-5TMR_LYT + PAS_9 + PAS_9 + HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_0530673Run 6 · HK · 1 sequences

Representative sequenceGCF_918180685#QOY35_RS00010The current gene is the representative for this cluster.

PFAM architecture5TM-5TMR_LYT + PAS_9 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0530673

Simplified PFAM architecture for HKOC_0530673

PFAM domain coverage: 492 / 820 aa (60.0%)

1 aa820 aa

5TM-5TMR_LYTPAS_9PAS_9HisKAHATPase_c

Simplified architecture: 5TM-5TMR_LYT + PAS_9 + PAS_9 + HisKA + HATPase_c
Raw architecture: 5TM-5TMR_LYT[22-143] | PAS_9[340-445] | PAS_9[483-580] | HisKA[598-659] | HATPase_c[705-808]
Domain count: 5
Matched identifier: HKOC_0530673
Positioned domains: 5TM-5TMR_LYT 22-143 ; PAS_9 340-445 ; PAS_9 483-580 ; HisKA 598-659 ; HATPase_c 705-808

Cluster members and taxonomy

Representative gene: GCF_918180685#QOY35_RS00010

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 396 · GCF_918180685

AssemblyISI 1342 · Scaffoldhaploid

Genome composition5 322 021 bp · 35,0% GCBacillus cereus

Signal transduction countsGenes 114 · HK 63 · RR 51CheA 1 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

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Preview from the same derived genome key