1 Response_reg#1
7-118 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:7:1.42e-33:118:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS19600
Response regulator OmpR family
uncultured Bacteroides sp. · GCF_905207245
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS19600Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 233 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:156:4.21e-20:231:78:77- Raw architecture: Response_reg:7:1.42e-33:118:112:111#Trans_reg_C:156:4.21e-20:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000078.1::G00095
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6142-6843Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000078.1::G00095Context members
QZ135_RS19600
Partner locus tags
QZ135_RS19600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294613284.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS19600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000078.1Sequence record reported by the local genomic context database.
Genomic interval6 142-6 843 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 142-6 843 ntGCF_905207245::NZ_CAJLKP010000078.1::G00095
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000078.1::G00095Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000078.1All displayed genes belong to this local TCS context.
Neighborhood span6 142-6 843 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 142 nt6 843 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS19600GCF_905207245#QZ135_RS19600
RROmpRCurrent focus
6 142-6 843 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS21470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1117498
Simplified PFAM architecture for RROC_1117498
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-117] | Trans_reg_C[157-230]
- Domain count: 2
- Matched identifier: RROC_1117498
- Positioned domains: Response_reg 7-117 ; Trans_reg_C 157-230
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS21470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key