1 PAS_4#1
419-486 aa · 68 aa · 8.8% of protein
Raw token
PAS_4:419:0.00000000195:486:69:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS00915
Histidine kinase, Classic
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeClassicLength775 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS00915Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length775 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 775 aa (31.2%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa775 aa
Domain-by-domain annotation3 items
2 HisKA#2
548-612 aa · 65 aa · 8.4% of protein
Raw token
HisKA:548:3.41e-21:612:65:643 HATPase_c#3
658-766 aa · 109 aa · 14.1% of protein
Raw token
HATPase_c:658:1.27e-30:766:110:109- Raw architecture: PAS_4:419:0.00000000195:486:69:110#HisKA:548:3.41e-21:612:65:64#HATPase_c:658:1.27e-30:766:110:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000002.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span227-2554Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000002.1::G00006Context members
QZ135_RS00915
Partner locus tags
QZ135_RS00915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294605008.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS00915Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000002.1Sequence record reported by the local genomic context database.
Genomic interval227-2 554 nt2 328 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span227-2 554 ntGCF_905207245::NZ_CAJLKP010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span227-2 554 nt2 328 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 nt2 554 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS00915GCF_905207245#QZ135_RS00915
HKClassicCurrent focus
227-2 554 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS09495Use this link to inspect the representative gene detail.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0608472
Simplified PFAM architecture for HKOC_0608472
PFAM domain coverage: 251 / 775 aa (32.4%)
1 aa775 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[419-496] | HisKA[548-612] | HATPase_c[658-765]
- Domain count: 3
- Matched identifier: HKOC_0608472
- Positioned domains: PAS_4 419-496 ; HisKA 548-612 ; HATPase_c 658-765
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS09495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key