1 Response_reg#1
3-111 aa · 109 aa · 44.5% of protein
Raw token
Response_reg:3:6.87e-20:111:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS13040
Response regulator LytTR family
uncultured Bacteroides sp. · GCF_905207245
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS13040Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 245 aa (85.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-243 aa · 101 aa · 41.2% of protein
Raw token
LytTR:143:6.71e-18:243:101:98- Raw architecture: Response_reg:3:6.87e-20:111:114:111#LytTR:143:6.71e-18:243:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000039.1::G00063
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41973-42710Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000039.1::G00063Context members
QZ135_RS13040
Partner locus tags
QZ135_RS13040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294609823.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS13040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000039.1Sequence record reported by the local genomic context database.
Genomic interval41 973-42 710 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 973-42 710 ntGCF_905207245::NZ_CAJLKP010000039.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000039.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000039.1All displayed genes belong to this local TCS context.
Neighborhood span41 973-42 710 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 973 nt42 710 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS13040GCF_905207245#QZ135_RS13040
RRLytTRCurrent focus
41 973-42 710 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_905207245#QZ135_RS13040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0805268
Simplified PFAM architecture for RROC_0805268
PFAM domain coverage: 208 / 245 aa (84.9%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-111] | LytTR[144-242]
- Domain count: 2
- Matched identifier: RROC_0805268
- Positioned domains: Response_reg 3-111 ; LytTR 144-242
Cluster members and taxonomy
Representative gene: GCF_905207245#QZ135_RS13040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key