1 Response_reg#1
4-109 aa · 106 aa · 44.2% of protein
Raw token
Response_reg:4:4.33e-21:109:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS08475
Response regulator LytTR family
uncultured Bacteroides sp. · GCF_905207245
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS08475Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 240 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-230 aa · 88 aa · 36.7% of protein
Raw token
LytTR:143:3.08e-17:230:94:98- Raw architecture: Response_reg:4:4.33e-21:109:111:111#LytTR:143:3.08e-17:230:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000020.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span37828-38550Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000020.1::G00042Context members
QZ135_RS08475
Partner locus tags
QZ135_RS08475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294607847.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS08475Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000020.1Sequence record reported by the local genomic context database.
Genomic interval37 828-38 550 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 828-38 550 ntGCF_905207245::NZ_CAJLKP010000020.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000020.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000020.1All displayed genes belong to this local TCS context.
Neighborhood span37 828-38 550 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 828 nt38 550 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS08475GCF_905207245#QZ135_RS08475
RRLytTRCurrent focus
37 828-38 550 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS13515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0904275
Simplified PFAM architecture for RROC_0904275
PFAM domain coverage: 194 / 240 aa (80.8%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[143-230]
- Domain count: 2
- Matched identifier: RROC_0904275
- Positioned domains: Response_reg 4-109 ; LytTR 143-230
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS13515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key