1 Response_reg#1
4-102 aa · 99 aa · 22.1% of protein
Raw token
Response_reg:4:1.75e-29:102:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS07625
Response regulator NtrC family
uncultured Bacteroides sp. · GCF_905207245
ClassRRTypeNtrCLength447 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS07625Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 447 aa (57.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa447 aa
Domain-by-domain annotation3 items
2 AAA_5#2
165-284 aa · 120 aa · 26.8% of protein
Raw token
AAA_5:165:0.00000000228:284:124:1353 HTH_8#3
407-445 aa · 39 aa · 8.7% of protein
Raw token
HTH_8:407:0.00000000000125:445:39:40- Raw architecture: Response_reg:4:1.75e-29:102:99:111#AAA_5:165:0.00000000228:284:124:135#HTH_8:407:0.00000000000125:445:39:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000017.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45707-47050Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000017.1::G00038Context members
QZ135_RS07625
Partner locus tags
QZ135_RS07625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294607431.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS07625Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000017.1Sequence record reported by the local genomic context database.
Genomic interval45 707-47 050 nt1 344 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 707-47 050 ntGCF_905207245::NZ_CAJLKP010000017.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000017.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000017.1All displayed genes belong to this local TCS context.
Neighborhood span45 707-47 050 nt1 344 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 707 nt47 050 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS07625GCF_905207245#QZ135_RS07625
RRNtrCCurrent focus
45 707-47 050 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS15560Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0306552
Simplified PFAM architecture for RROC_0306552
PFAM domain coverage: 397 / 447 aa (88.8%)
1 aa447 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[4-110] | Sigma54_activat[142-308] | AAA_lid_14[314-397] | HTH_8[407-445]
- Domain count: 4
- Matched identifier: RROC_0306552
- Positioned domains: Response_reg 4-110 ; Sigma54_activat 142-308 ; AAA_lid_14 314-397 ; HTH_8 407-445
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS15560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key