1 HAMP#1
53-122 aa · 70 aa · 14.6% of protein
Raw token
HAMP:53:0.000000000000202:122:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS07585
Histidine kinase, Classic
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS07585Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage320 / 479 aa (66.8%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation4 items
2 PAS#2
136-210 aa · 75 aa · 15.7% of protein
Raw token
PAS:136:0.00000151:210:77:1133 HisKA#3
257-325 aa · 69 aa · 14.4% of protein
Raw token
HisKA:257:0.00000000000000252:325:69:644 HATPase_c#4
373-478 aa · 106 aa · 22.1% of protein
Raw token
HATPase_c:373:3.53e-29:478:106:109- Raw architecture: HAMP:53:0.000000000000202:122:70:69#PAS:136:0.00000151:210:77:113#HisKA:257:0.00000000000000252:325:69:64#HATPase_c:373:3.53e-29:478:106:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000017.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span36255-37694Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000017.1::G00037Context members
QZ135_RS07585
Partner locus tags
QZ135_RS07585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294607415.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS07585Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000017.1Sequence record reported by the local genomic context database.
Genomic interval36 255-37 694 nt1 440 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 255-37 694 ntGCF_905207245::NZ_CAJLKP010000017.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000017.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000017.1All displayed genes belong to this local TCS context.
Neighborhood span36 255-37 694 nt1 440 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 255 nt37 694 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS07585GCF_905207245#QZ135_RS07585
HKClassicCurrent focus
36 255-37 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040096925#AAA231_RS11590Use this link to inspect the representative gene detail.
PFAM architectureHAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1634445
Simplified PFAM architecture for HKOC_1634445
PFAM domain coverage: 296 / 479 aa (61.8%)
1 aa479 aa
HAMPPASHisKAHATPase_c
- Simplified architecture: HAMP + PAS + HisKA + HATPase_c
- Raw architecture: HAMP[73-121] | PAS[137-208] | HisKA[257-325] | HATPase_c[373-478]
- Domain count: 4
- Matched identifier: HKOC_1634445
- Positioned domains: HAMP 73-121 ; PAS 137-208 ; HisKA 257-325 ; HATPase_c 373-478
Cluster members and taxonomy
Representative gene: GCF_040096925#AAA231_RS11590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key