1 HisKA#1
817-873 aa · 57 aa · 4.3% of protein
Raw token
HisKA:817:0.00000000679:873:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS06260
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeHybridLength1327 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS06260Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1327 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage322 / 1327 aa (24.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1327 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
923-1037 aa · 115 aa · 8.7% of protein
Raw token
HATPase_c:923:1.47e-28:1037:115:1093 Response_reg#3
1077-1187 aa · 111 aa · 8.4% of protein
Raw token
Response_reg:1077:2.26e-29:1187:112:1114 HTH_AraC#4
1282-1320 aa · 39 aa · 2.9% of protein
Raw token
HTH_AraC:1282:0.00000000171:1320:39:42- Raw architecture: HisKA:817:0.00000000679:873:57:64#HATPase_c:923:1.47e-28:1037:115:109#Response_reg:1077:2.26e-29:1187:112:111#HTH_AraC:1282:0.00000000171:1320:39:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000013.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span77857-81840Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000013.1::G00033Context members
QZ135_RS06260
Partner locus tags
QZ135_RS06260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606876.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS06260Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000013.1Sequence record reported by the local genomic context database.
Genomic interval77 857-81 840 nt3 984 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 857-81 840 ntGCF_905207245::NZ_CAJLKP010000013.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000013.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000013.1All displayed genes belong to this local TCS context.
Neighborhood span77 857-81 840 nt3 984 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 857 nt81 840 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS06260GCF_905207245#QZ135_RS06260
HKHybridCurrent focus
77 857-81 840 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS14850Use this link to inspect the representative gene detail.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_188 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0111634
Simplified PFAM architecture for HKOC_0111634
PFAM domain coverage: 481 / 1327 aa (36.2%)
1 aa1327 aa
Reg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[33-55] | Reg_prop[206-226] | Reg_prop[445-461] | Y_Y_Y[701-761] | HisKA[817-873] | HATPase_c[924-1036] | Response_reg[1077-1186] | HTH_18[1242-1320]
- Domain count: 8
- Matched identifier: HKOC_0111634
- Positioned domains: Reg_prop 33-55 ; Reg_prop 206-226 ; Reg_prop 445-461 ; Y_Y_Y 701-761 ; HisKA 817-873 ; HATPase_c 924-1036 ; Response_reg 1077-1186 ; HTH_18 1242-1320
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS14850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key