1 PAS_9#1
28-133 aa · 106 aa · 11.9% of protein
Raw token
PAS_9:28:0.000000283:133:108:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS05890
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeHybridLength892 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS05890Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
PAS_9PAS_3HisKAHATPase_cResponse_reg
Protein length892 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage457 / 892 aa (51.2%)Merged over positioned domains only.
Domain description1 PAS_9,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa892 aa
Domain-by-domain annotation5 items
2 PAS_3#2
430-506 aa · 77 aa · 8.6% of protein
Raw token
PAS_3:430:0.000000209:506:78:893 HisKA#3
534-598 aa · 65 aa · 7.3% of protein
Raw token
HisKA:534:1.25e-21:598:65:644 HATPase_c#4
645-748 aa · 104 aa · 11.7% of protein
Raw token
HATPase_c:645:6.42e-31:748:105:1095 Response_reg#5
781-885 aa · 105 aa · 11.8% of protein
Raw token
Response_reg:781:3.43e-25:885:107:111- Raw architecture: PAS_9:28:0.000000283:133:108:102#PAS_3:430:0.000000209:506:78:89#HisKA:534:1.25e-21:598:65:64#HATPase_c:645:6.42e-31:748:105:109#Response_reg:781:3.43e-25:885:107:111
- Domain description: 1 PAS_9,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000012.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span42739-45417Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000012.1::G00029Context members
QZ135_RS05890
Partner locus tags
QZ135_RS05890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606733.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS05890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000012.1Sequence record reported by the local genomic context database.
Genomic interval42 739-45 417 nt2 679 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 739-45 417 ntGCF_905207245::NZ_CAJLKP010000012.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000012.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000012.1All displayed genes belong to this local TCS context.
Neighborhood span42 739-45 417 nt2 679 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 739 nt45 417 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS05890GCF_905207245#QZ135_RS05890
HKHybridCurrent focus
42 739-45 417 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS02320Use this link to inspect the representative gene detail.
PFAM architecturePAS_9 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0426743
Simplified PFAM architecture for HKOC_0426743
PFAM domain coverage: 380 / 892 aa (42.6%)
1 aa892 aa
PAS_9HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_9 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_9[29-133] | HisKA[534-598] | HATPase_c[645-749] | Response_reg[781-885]
- Domain count: 4
- Matched identifier: HKOC_0426743
- Positioned domains: PAS_9 29-133 ; HisKA 534-598 ; HATPase_c 645-749 ; Response_reg 781-885
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS02320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key