1 HisKA#1
944-1009 aa · 66 aa · 4.5% of protein
Raw token
HisKA:944:4.28e-18:1009:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS05615
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeHybridLength1483 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS05615Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1483 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage321 / 1483 aa (21.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1483 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
1057-1162 aa · 106 aa · 7.1% of protein
Raw token
HATPase_c:1057:7.17e-23:1162:106:1093 Response_reg#3
1223-1333 aa · 111 aa · 7.5% of protein
Raw token
Response_reg:1223:1.93e-29:1333:112:1114 HTH_AraC#4
1440-1477 aa · 38 aa · 2.6% of protein
Raw token
HTH_AraC:1440:0.00000000162:1477:38:42- Raw architecture: HisKA:944:4.28e-18:1009:66:64#HATPase_c:1057:7.17e-23:1162:106:109#Response_reg:1223:1.93e-29:1333:112:111#HTH_AraC:1440:0.00000000162:1477:38:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000011.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span57769-62220Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000011.1::G00025Context members
QZ135_RS05615
Partner locus tags
QZ135_RS05615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606695.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS05615Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000011.1Sequence record reported by the local genomic context database.
Genomic interval57 769-62 220 nt4 452 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span57 769-62 220 ntGCF_905207245::NZ_CAJLKP010000011.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000011.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000011.1All displayed genes belong to this local TCS context.
Neighborhood span57 769-62 220 nt4 452 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 769 nt62 220 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS05615GCF_905207245#QZ135_RS05615
HKHybridCurrent focus
57 769-62 220 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS06075Use this link to inspect the representative gene detail.
PFAM architectureReg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_187 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0050729
Simplified PFAM architecture for HKOC_0050729
PFAM domain coverage: 474 / 1483 aa (32.0%)
1 aa1483 aa
Reg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[33-56] | Reg_prop[548-570] | Y_Y_Y[833-897] | HisKA[945-1009] | HATPase_c[1057-1164] | Response_reg[1223-1332] | HTH_18[1400-1478]
- Domain count: 7
- Matched identifier: HKOC_0050729
- Positioned domains: Reg_prop 33-56 ; Reg_prop 548-570 ; Y_Y_Y 833-897 ; HisKA 945-1009 ; HATPase_c 1057-1164 ; Response_reg 1223-1332 ; HTH_18 1400-1478
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS06075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key