1 HisKA#1
677-741 aa · 65 aa · 6.3% of protein
Raw token
HisKA:677:5.04e-20:741:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS03825
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeHybridLength1038 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS03825Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length1038 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage273 / 1038 aa (26.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1038 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
791-891 aa · 101 aa · 9.7% of protein
Raw token
HATPase_c:791:8.79e-34:891:102:1093 Response_reg#3
919-1025 aa · 107 aa · 10.3% of protein
Raw token
Response_reg:919:5.4e-28:1025:108:111- Raw architecture: HisKA:677:5.04e-20:741:65:64#HATPase_c:791:8.79e-34:891:102:109#Response_reg:919:5.4e-28:1025:108:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000007.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span50182-53298Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000007.1::G00019Context members
QZ135_RS03825
Partner locus tags
QZ135_RS03825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606087.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS03825Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000007.1Sequence record reported by the local genomic context database.
Genomic interval50 182-53 298 nt3 117 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 182-53 298 ntGCF_905207245::NZ_CAJLKP010000007.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000007.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000007.1All displayed genes belong to this local TCS context.
Neighborhood span50 182-53 298 nt3 117 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 182 nt53 298 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS03825GCF_905207245#QZ135_RS03825
HKHybridCurrent focus
50 182-53 298 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS03695Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0266867
Simplified PFAM architecture for HKOC_0266867
PFAM domain coverage: 277 / 1038 aa (26.7%)
1 aa1038 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[677-741] | HATPase_c[789-892] | Response_reg[919-1026]
- Domain count: 3
- Matched identifier: HKOC_0266867
- Positioned domains: HisKA 677-741 ; HATPase_c 789-892 ; Response_reg 919-1026
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS03695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key