1 HisKA#1
368-434 aa · 67 aa · 7.4% of protein
Raw token
HisKA:368:0.000000000000979:434:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS03600
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeHybridLength906 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS03600Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length906 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage330 / 906 aa (36.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa906 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
481-592 aa · 112 aa · 12.4% of protein
Raw token
HATPase_c:481:3.48e-26:592:112:1093 Response_reg#3
647-756 aa · 110 aa · 12.1% of protein
Raw token
Response_reg:647:1.09e-25:756:112:1114 HTH_AraC#4
853-893 aa · 41 aa · 4.5% of protein
Raw token
HTH_AraC:853:0.0000000315:893:43:42- Raw architecture: HisKA:368:0.000000000000979:434:67:64#HATPase_c:481:3.48e-26:592:112:109#Response_reg:647:1.09e-25:756:112:111#HTH_AraC:853:0.0000000315:893:43:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000006.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span116818-119538Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000006.1::G00018Context members
QZ135_RS03600
Partner locus tags
QZ135_RS03600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606009.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS03600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000006.1Sequence record reported by the local genomic context database.
Genomic interval116 818-119 538 nt2 721 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 818-119 538 ntGCF_905207245::NZ_CAJLKP010000006.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000006.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000006.1All displayed genes belong to this local TCS context.
Neighborhood span116 818-119 538 nt2 721 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 818 nt119 538 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS03600GCF_905207245#QZ135_RS03600
HKHybridCurrent focus
116 818-119 538 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS08940Use this link to inspect the representative gene detail.
PFAM architectureY_Y_Y + HisKA + HATPase_c + Response_reg + HTH_185 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0398367
Simplified PFAM architecture for HKOC_0398367
PFAM domain coverage: 422 / 906 aa (46.6%)
1 aa906 aa
Y_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Y_Y_Y[257-313] | HisKA[369-434] | HATPase_c[481-589] | Response_reg[647-756] | HTH_18[814-893]
- Domain count: 5
- Matched identifier: HKOC_0398367
- Positioned domains: Y_Y_Y 257-313 ; HisKA 369-434 ; HATPase_c 481-589 ; Response_reg 647-756 ; HTH_18 814-893
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS08940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key