1 HisKA#1
904-968 aa · 65 aa · 4.6% of protein
Raw token
HisKA:904:0.0000000000729:968:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS03515
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeHybridLength1420 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_905207245#QZ135_RS03515Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1420 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage341 / 1420 aa (24.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1420 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
1015-1135 aa · 121 aa · 8.5% of protein
Raw token
HATPase_c:1015:2.27e-27:1135:121:1093 Response_reg#3
1169-1280 aa · 112 aa · 7.9% of protein
Raw token
Response_reg:1169:1.33e-33:1280:113:1114 HTH_AraC#4
1375-1417 aa · 43 aa · 3.0% of protein
Raw token
HTH_AraC:1375:0.00000000409:1417:43:42- Raw architecture: HisKA:904:0.0000000000729:968:65:64#HATPase_c:1015:2.27e-27:1135:121:109#Response_reg:1169:1.33e-33:1280:113:111#HTH_AraC:1375:0.00000000409:1417:43:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_905207245::NZ_CAJLKP010000006.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span92926-97188Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000006.1::G00017Context members
QZ135_RS03515
Partner locus tags
QZ135_RS03515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294605979.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS03515Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000006.1Sequence record reported by the local genomic context database.
Genomic interval92 926-97 188 nt4 263 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span92 926-97 188 ntGCF_905207245::NZ_CAJLKP010000006.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000006.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000006.1All displayed genes belong to this local TCS context.
Neighborhood span92 926-97 188 nt4 263 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 926 nt97 188 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZ135_RS03515GCF_905207245#QZ135_RS03515
HKHybridCurrent focus
92 926-97 188 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS09025Use this link to inspect the representative gene detail.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1810 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0063392
Simplified PFAM architecture for HKOC_0063392
PFAM domain coverage: 553 / 1420 aa (38.9%)
1 aa1420 aa
Reg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[41-63] | Reg_prop[366-387] | Reg_prop[412-434] | Reg_prop[565-583] | Reg_prop[607-630] | Y_Y_Y[741-805] | HisKA[905-968] | HATPase_c[1015-1134] | Response_reg[1169-1279] | HTH_18[1336-1417]
- Domain count: 10
- Matched identifier: HKOC_0063392
- Positioned domains: Reg_prop 41-63 ; Reg_prop 366-387 ; Reg_prop 412-434 ; Reg_prop 565-583 ; Reg_prop 607-630 ; Y_Y_Y 741-805 ; HisKA 905-968 ; HATPase_c 1015-1134 ; Response_reg 1169-1279 ; HTH_18 1336-1417
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS09025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key