1 HisKA#1
453-519 aa · 67 aa · 10.0% of protein
Raw token
HisKA:453:4.31e-18:519:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZ135_RS01900
Histidine kinase, Classic
uncultured Bacteroides sp. · GCF_905207245
ClassHKTypeClassicLength673 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_905207245#QZ135_RS01900Stable P2CS identifier used across views.
GenomeGCF_905207245Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length673 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 673 aa (26.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa673 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
564-673 aa · 110 aa · 16.3% of protein
Raw token
HATPase_c:564:4.96e-33:673:111:109- Raw architecture: HisKA:453:4.31e-18:519:67:64#HATPase_c:564:4.96e-33:673:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_905207245::NZ_CAJLKP010000003.1::G00012
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span83358-87416Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905207245::NZ_CAJLKP010000003.1::G00012Context members
QZ135_RS01895QZ135_RS01900
Partner locus tags
QZ135_RS01895QZ135_RS01900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294605445.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZ135_RS01900Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJLKP010000003.1Sequence record reported by the local genomic context database.
Genomic interval85 395-87 416 nt2 022 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 358-87 416 ntGCF_905207245::NZ_CAJLKP010000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905207245::NZ_CAJLKP010000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJLKP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span83 358-87 416 nt4 059 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 358 nt87 416 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZ135_RS01895GCF_905207245#QZ135_RS01895
HKClassic
83 358-85 316 nt · Forward (+)
QZ135_RS01900GCF_905207245#QZ135_RS01900
HKClassicCurrent focus
85 395-87 416 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS07065Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0838731
Simplified PFAM architecture for HKOC_0838731
PFAM domain coverage: 174 / 673 aa (25.9%)
1 aa673 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[453-518] | HATPase_c[565-672]
- Domain count: 2
- Matched identifier: HKOC_0838731
- Positioned domains: HisKA 453-518 ; HATPase_c 565-672
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS07065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_905207245
AssemblyERR321312-mag-bin.11 · Contighaploid
Genome composition6 296 447 bp · 44,0% GCuncultured Bacteroides sp.
Signal transduction countsGenes 136 · HK 99 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key