1 HAMP#1
280-351 aa · 72 aa · 12.4% of protein
Raw token
HAMP:280:0.000000125:351:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NW138_RS01405
Histidine kinase, Classic
Neglectibacter timonensis · GCF_905200465
ClassHKTypeClassicLength579 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_905200465#NW138_RS01405Stable P2CS identifier used across views.
GenomeGCF_905200465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length579 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 579 aa (42.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa579 aa
Domain-by-domain annotation3 items
2 His_kinase#2
367-436 aa · 70 aa · 12.1% of protein
Raw token
His_kinase:367:5.51e-20:436:70:803 HATPase_c#3
462-565 aa · 104 aa · 18.0% of protein
Raw token
HATPase_c:462:0.0000000151:565:109:109- Raw architecture: HAMP:280:0.000000125:351:72:69#His_kinase:367:5.51e-20:436:70:80#HATPase_c:462:0.0000000151:565:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_905200465::NZ_CAJKKG010000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span131684-135006Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905200465::NZ_CAJKKG010000002.1::G00006Context members
NW138_RS01405NW138_RS01410
Partner locus tags
NW138_RS01405NW138_RS01410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066863293.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1S218Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1S218_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNW138_RS01405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJKKG010000002.1Sequence record reported by the local genomic context database.
Genomic interval131 684-133 423 nt1 740 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span131 684-135 006 ntGCF_905200465::NZ_CAJKKG010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905200465::NZ_CAJKKG010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJKKG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span131 684-135 006 nt3 323 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 684 nt135 006 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NW138_RS01405GCF_905200465#NW138_RS01405
HKClassicCurrent focus
131 684-133 423 nt · Forward (+)
NW138_RS01410GCF_905200465#NW138_RS01410
RRunclassified
133 420-135 006 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460975#NE695_RS11830Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1170044
Simplified PFAM architecture for HKOC_1170044
PFAM domain coverage: 175 / 579 aa (30.2%)
1 aa579 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-437] | HATPase_c[463-566]
- Domain count: 2
- Matched identifier: HKOC_1170044
- Positioned domains: His_kinase 367-437 ; HATPase_c 463-566
Cluster members and taxonomy
Representative gene: GCF_024460975#NE695_RS11830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_905200465
AssemblyERR1600710-mag-bin.28 · Contighaploid
Genome composition3 428 600 bp · 53,0% GCNeglectibacter timonensis
Signal transduction countsGenes 102 · HK 52 · RR 47CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key