1 HAMP#1
57-127 aa · 71 aa · 19.9% of protein
Raw token
HAMP:57:3.77e-19:127:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FQ140_RS06480
Histidine kinase, Classic
Bifidobacterium breve · GCF_902167895
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167895#FQ140_RS06480Stable P2CS identifier used across views.
GenomeGCF_902167895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 357 aa (69.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.00000000000000328:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.1% of protein
Raw token
HATPase_c:240:1.92e-23:350:112:109- Raw architecture: HAMP:57:3.77e-19:127:71:69#HisKA:131:0.00000000000000328:195:65:64#HATPase_c:240:1.92e-23:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167895::NZ_CABHNR010000060.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39808-41603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBJG463_01396RefSeq proteinWP_144181060.1
Context group ID
GCF_902167895::NZ_CABHNR010000060.1::G00008Context members
FQ140_RS06475FQ140_RS06480
Partner locus tags
FQ140_RS06475FQ140_RS06480
Partner old locus tags
BBJG463_01395BBJG463_01396
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144181060.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFQ140_RS06480Primary locus identifier stored in the genes table.
Old locus tagBBJG463_01396Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHNR010000060.1Sequence record reported by the local genomic context database.
Genomic interval40 530-41 603 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 808-41 603 ntGCF_902167895::NZ_CABHNR010000060.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167895::NZ_CABHNR010000060.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHNR010000060.1All displayed genes belong to this local TCS context.
Neighborhood span39 808-41 603 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 808 nt41 603 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FQ140_RS06475GCF_902167895#FQ140_RS06475
RROmpR
39 808-40 530 nt · Forward (+)
FQ140_RS06480GCF_902167895#FQ140_RS06480
HKClassicCurrent focus
40 530-41 603 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014779815#FKX98_RS04505Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2767308
Simplified PFAM architecture for HKOC_2767308
PFAM domain coverage: 230 / 357 aa (64.4%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[132-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2767308
- Positioned domains: HAMP 73-126 ; HisKA 132-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_014779815#FKX98_RS04505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_902167895
AssemblyBifidobacterium_breve_JG_Bg463 · Contighaploid
Genome composition2 345 073 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 31 · HK 12 · RR 16CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key