1 Response_reg#1
6-110 aa · 105 aa · 44.1% of protein
Raw token
Response_reg:6:8.16e-21:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BILOF6F16E45_RS02265
Response regulator LytTR family
Bifidobacterium catenulatum · GCF_902167655
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902167655#BILOF6F16E45_RS02265Stable P2CS identifier used across views.
GenomeGCF_902167655Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 238 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-229 aa · 91 aa · 38.2% of protein
Raw token
LytTR:139:8.46e-17:229:97:98- Raw architecture: Response_reg:6:8.16e-21:110:108:111#LytTR:139:8.46e-17:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902167655::NZ_CABHMW010000003.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span59776-60492Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCJG468_01384%2CFQ328_RS02300RefSeq proteinWP_144165424.1
Context group ID
GCF_902167655::NZ_CABHMW010000003.1::G00003Context members
BILOF6F16E45_RS02265
Partner locus tags
BILOF6F16E45_RS02265
Partner old locus tags
BCJG468_01384%2CFQ328_RS02300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144165424.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBILOF6F16E45_RS02265Primary locus identifier stored in the genes table.
Old locus tagBCJG468_01384%2CFQ328_RS02300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHMW010000003.1Sequence record reported by the local genomic context database.
Genomic interval59 776-60 492 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 776-60 492 ntGCF_902167655::NZ_CABHMW010000003.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167655::NZ_CABHMW010000003.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHMW010000003.1All displayed genes belong to this local TCS context.
Neighborhood span59 776-60 492 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 776 nt60 492 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BILOF6F16E45_RS02265GCF_902167655#BILOF6F16E45_RS02265
RRLytTRCurrent focus
59 776-60 492 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902167655#BILOF6F16E45_RS02265The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0959981
Simplified PFAM architecture for RROC_0959981
PFAM domain coverage: 193 / 238 aa (81.1%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-110] | LytTR[142-229]
- Domain count: 2
- Matched identifier: RROC_0959981
- Positioned domains: Response_reg 6-110 ; LytTR 142-229
Cluster members and taxonomy
Representative gene: GCF_902167655#BILOF6F16E45_RS02265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_902167655
AssemblyNZ_Bifidobacterium_catenulatum_BCJG468_a2_mod · Contighaploid
Genome composition2 172 625 bp · 56,5% GCBifidobacterium catenulatum
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key