1 Response_reg#1
4-121 aa · 118 aa · 52.0% of protein
Raw token
Response_reg:4:5.92e-25:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JX293_RS01020
Response regulator NarL family
Bifidobacterium longum · GCF_901873505
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901873505#JX293_RS01020Stable P2CS identifier used across views.
GenomeGCF_901873505Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 227 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-216 aa · 57 aa · 25.1% of protein
Raw token
HTH_LUXR:160:0.0000000000012:216:57:58- Raw architecture: Response_reg:4:5.92e-25:121:118:111#HTH_LUXR:160:0.0000000000012:216:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901873505::NZ_CABFLL010000005.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26078-28043Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOILLDJDD_02071RefSeq proteinWP_204385482.1
Context group ID
GCF_901873505::NZ_CABFLL010000005.1::G00002Context members
JX293_RS01020JX293_RS01025
Partner locus tags
JX293_RS01020JX293_RS01025
Partner old locus tags
OILLDJDD_02071OILLDJDD_02072
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_204385482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJX293_RS01020Primary locus identifier stored in the genes table.
Old locus tagOILLDJDD_02071Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABFLL010000005.1Sequence record reported by the local genomic context database.
Genomic interval26 078-26 761 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 078-28 043 ntGCF_901873505::NZ_CABFLL010000005.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901873505::NZ_CABFLL010000005.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABFLL010000005.1All displayed genes belong to this local TCS context.
Neighborhood span26 078-28 043 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 078 nt28 043 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JX293_RS01020GCF_901873505#JX293_RS01020
RRNarLCurrent focus
26 078-26 761 nt · Reverse (-)
JX293_RS01025GCF_901873505#JX293_RS01025
HKClassic
26 754-28 043 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_901873505#JX293_RS01020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1405797
Simplified PFAM architecture for RROC_1405797
PFAM domain coverage: 173 / 227 aa (76.2%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[161-215]
- Domain count: 2
- Matched identifier: RROC_1405797
- Positioned domains: Response_reg 4-121 ; GerE 161-215
Cluster members and taxonomy
Representative gene: GCF_901873505#JX293_RS01020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_901873505
AssemblyBifidobacterium_longum_BgEED06 · Contighaploid
Genome composition2 426 212 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key