1 HAMP#1
139-204 aa · 66 aa · 15.0% of protein
Raw token
HAMP:139:0.000000296:204:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF66_RS15130
Histidine kinase, Classic
Clostridioides difficile · GCF_901004615
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901004615#FJF66_RS15130Stable P2CS identifier used across views.
GenomeGCF_901004615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 440 aa (53.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-288 aa · 70 aa · 15.9% of protein
Raw token
HisKA:219:0.0000000016:288:70:643 HATPase_c#3
336-435 aa · 100 aa · 22.7% of protein
Raw token
HATPase_c:336:5.17e-24:435:101:109- Raw architecture: HAMP:139:0.000000296:204:66:69#HisKA:219:0.0000000016:288:70:64#HATPase_c:336:5.17e-24:435:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901004615::NZ_CAAJVI010000010.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8091-10075Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402369_03000RefSeq proteinWP_139627028.1
Context group ID
GCF_901004615::NZ_CAAJVI010000010.1::G00053Context members
FJF66_RS15125FJF66_RS15130
Partner locus tags
FJF66_RS15125FJF66_RS15130
Partner old locus tags
SAMEA1402369_02999SAMEA1402369_03000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_139627028.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF66_RS15130Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402369_03000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJVI010000010.1Sequence record reported by the local genomic context database.
Genomic interval8 753-10 075 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 091-10 075 ntGCF_901004615::NZ_CAAJVI010000010.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004615::NZ_CAAJVI010000010.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJVI010000010.1All displayed genes belong to this local TCS context.
Neighborhood span8 091-10 075 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 091 nt10 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FJF66_RS15125GCF_901004615#FJF66_RS15125
RROmpR
8 091-8 765 nt · Forward (+)
FJF66_RS15130GCF_901004615#FJF66_RS15130
HKClassicCurrent focus
8 753-10 075 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_901004615#FJF66_RS15130The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2081764
Simplified PFAM architecture for HKOC_2081764
PFAM domain coverage: 216 / 440 aa (49.1%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[159-204] | HisKA[220-287] | HATPase_c[335-436]
- Domain count: 3
- Matched identifier: HKOC_2081764
- Positioned domains: HAMP 159-204 ; HisKA 220-287 ; HATPase_c 335-436
Cluster members and taxonomy
Representative gene: GCF_901004615#FJF66_RS15130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004615
Assembly7614_4#73 · Contighaploid
Genome composition4 274 293 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 113 · HK 55 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key