Gene detail

FJF30_RS02440

Histidine kinase, Classic

Clostridioides difficile · GCF_901004525

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_901004525#FJF30_RS02440Stable P2CS identifier used across views.

GenomeGCF_901004525Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides

Selected clusterHKOC_2220062Run 6 · 9 sequences · id 100% · cov 80%

External referencesWP_074073338.1 · MIST4 FJF30_RS02440RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length425 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage183 / 425 aa (43.1%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa425 aa

Domain-by-domain annotation2 items

1 HisKA#1

196-260 aa · 65 aa · 15.3% of protein

Raw tokenHisKA:196:0.000000000017:260:65:64

2 HATPase_c#2

307-424 aa · 118 aa · 27.8% of protein

Raw tokenHATPase_c:307:4.13e-19:424:119:109

Raw architecture: HisKA:196:0.000000000017:260:65:64#HATPase_c:307:4.13e-19:424:119:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_901004525::NZ_CAAJVB010000002.1::G00010

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span196473-198402Genomic interval covered by the local TCS group.

Identifiers

Old locus tagSAMEA1402359_00484RefSeq proteinWP_074073338.1

Context group IDGCF_901004525::NZ_CAAJVB010000002.1::G00010

Context members

FJF30_RS02435FJF30_RS02440

Partner locus tags

FJF30_RS02435FJF30_RS02440

Partner old locus tags

SAMEA1402359_00483SAMEA1402359_00484

Partner protein IDs

WP_003424455.1 WP_074073338.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_074073338.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagFJF30_RS02440Primary locus identifier stored in the genes table.

Old locus tagSAMEA1402359_00484Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CAAJVB010000002.1Sequence record reported by the local genomic context database.

Genomic interval197 125-198 402 nt1 278 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span196 473-198 402 ntGCF_901004525::NZ_CAAJVB010000002.1::G00010

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_901004525::NZ_CAAJVB010000002.1::G00010

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CAAJVB010000002.1All displayed genes belong to this local TCS context.

Neighborhood span196 473-198 402 nt1 930 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

196 473 nt198 402 nt

+-FJF30_RS02435 FJF30_RS02440

Neighborhood gene cards

2 genes in the current local neighborhood.

FJF30_RS02435GCF_901004525#FJF30_RS02435

RROmpR

196 473-197 141 nt · Forward (+)

Old locus SAMEA1402359_00483RefSeq WP_003424455.1

Open gene

FJF30_RS02440GCF_901004525#FJF30_RS02440

HKClassicCurrent focus

197 125-198 402 nt · Forward (+)

Old locus SAMEA1402359_00484RefSeq WP_074073338.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2220062HK

Run 69 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Representative GCF_024259965#NMF99_RS12520

Selected clusterHKOC_2220062Run 6 · HK · 9 sequences

Representative sequenceGCF_024259965#NMF99_RS12520Use this link to inspect the representative gene detail.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_2220062

Simplified PFAM architecture for HKOC_2220062

PFAM domain coverage: 179 / 425 aa (42.1%)

1 aa425 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[197-260] | HATPase_c[308-422]
Domain count: 2
Matched identifier: HKOC_2220062
Positioned domains: HisKA 197-260 ; HATPase_c 308-422

Cluster members and taxonomy

Representative gene: GCF_024259965#NMF99_RS12520

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004525

Assembly7614_4#58 · Contighaploid

Genome composition4 288 095 bp · 28,5% GCClostridioides difficile

Signal transduction countsGenes 102 · HK 48 · RR 52CheA 1 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key